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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAGCTCCGTGAGACTGTTTTTTCACTGTTAGATCTTAAAGTAGTACCCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttcttaattgcttctgcacggccgtacaccaaccttccaatctaataacagctgggcccttggttgtgttcctacttactactgattgtaataatgaatttaatttacag

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 5
GGACCAGCTCCGTGAGACTGTTTTTTCACTGTTAGATCTTAAAGTAGTACCCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttcttaattgcttc---tgcac--ggccgtacaccaaccttccaatct----aataacagctgggcccttggttgtgttcctacttactactgattgtaataatgaatttaatttacag
| |||||||||| |||||||||  ||| ||||||||||| || ||  ||||  |||||||||||||||| |||||||||||| |||| || ||||| ||||| ||||| || |  || ||    |||||  ||   | |||  |  |     | |    |||  ||       |      |    |  |||    ||||||||||||| || ||     | ||   
GAACCAGCTCCGCGAGACTGTTAATTCTCTGTTAGATCTCAAGGTTATACCAGTATTTAATGAGAATGACGCCATCAGTACCAGGAGGCAACCATACGAGgtgtgtttcctaatgtgatttgtgtgcactgggagcttcactgatatatacgtattccaaattccattaacaacaaacactaaccttttacactttactgattgtaatgatcaaccgtgtgtag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211514098|gb|FL183141.1|FL183141
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
EST: gi|6021065|gb|AW065993.1|AW065993
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
EST: gi|149066720|gb|EE286861.2|EE286861
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
EST: gi|74245732|gb|DT653646.1|DT653646
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
EST: gi|101391687|gb|EB817780.1|EB817780
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGGATA-TGACAGTCTAGCAGCT
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGG-ATAATGACAGTCTAGCAGCT
EST: gi|211514099|gb|FL183142.1|FL183142
EST:     CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAG                         GATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA
genomic: CCTTATTTAATGAGAATGATGCCATCAGTACCCGGAGACAGCCATATGAGgtctgttttc ... taatttacagGATTCATCTGGTATATTCTGGGATAATGACAGTCTAGCAGCTCTGTTGGCA