1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGCTCTCCAAAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgcttttgtttcaactctagtatttctagtacaactatttttcatttttttgttttatttcagagtttcataacaaaaatcatatttcgattcatttgaataaaaaaactgtcgatttcttgtcacgttttgcaaaatccag
species | Zea mays |
transcript | GRMZM2G028369_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|89764468|gb|DY691263.1|DY691263
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|110527397|gb|EE031581.1|EE031581
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGTTCAG GACCGTGATCAACTCATGCCCCTTTTCACATATGAAACGGTGGAGCGTGCTEST: gi|60338762|gb|DN205735.1|DN205735
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTTTCACATATGAAACGGTGGAGCGTGCTEST: gi|15080346|gb|BI389029.1|BI389029
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|45567875|gb|CK985790.1|CK985790
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|148987695|gb|EE031582.2|EE031582
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGEST: gi|91872761|gb|EB402718.1|EB402718
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATG
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|149067523|gb|EE157730.2|EE157730
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGTTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|60337916|gb|DN204889.1|DN204889
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|78104614|gb|DV523032.1|DV523032
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|71447644|gb|DR828694.1|DR828694
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|76017119|gb|DT944289.1|DT944289
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|71763787|gb|DR961724.1|DR961724
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|211255526|gb|FL453202.1|FL453202
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: AGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|91872760|gb|EB402717.1|EB402717
genomic: AGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAG GACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
genomic: CTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgctt ... caaaatccagGACCGTGATCAACTCATGCACCTTCTCACATATGAAACGGTGGAGCGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTCTCCAAAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCTAAGTTTCAGGAGTCCCCGGAAGCTTACATGCCAGCCATAATAGCTCAGgtctgtgcttttgtttcaactctagtatttctagtacaactatttttcatttttttgttttatttcagagtttcataacaaaaatcatatttcgattcatttgaataaaaaaactgtcgatttcttgtcacgttttgcaaaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA