1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTGTAGAGGCTGAGAGGATATCTGTGGACCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattctactttgaagccctctctcaaaacaaatttatgggtcagtgggtgtcttccccgtggctttgctttctcaacaaatagtcatattatccgaggtatttttctggatagaaatgtactaaacgatgcttttgtgcag
species | Zea mays |
transcript | GRMZM2G028089_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|74245516|gb|DT653430.1|DT653430
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|37383993|gb|CF629039.1|CF629039
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CAGCAGCAACTCAGT TGGCTGCTCATC-TACAGGGAATACACAGTGCCATCAAGATGCTCAATAGCEST: gi|37378561|gb|CF625975.1|CF625975
genomic: CAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACA-GGAATACACAGTGCCATCAAGATGCTCAATAGC
EST: CCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGATGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|148964739|gb|EC906002.2|EC906002
genomic: CCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGGATACACAGTGCCATCAAGATGCTEST: gi|71427075|gb|DR808125.1|DR808125
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCT
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTEST: gi|78079914|gb|DV508326.1|DV508326
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTT
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGGCATCAAGATGCTCAATAGCAEST: gi|71428766|gb|DR809816.1|DR809816
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|71428767|gb|DR809817.1|DR809817
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGNTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAEST: gi|78079913|gb|DV508325.1|DV508325
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|5847033|gb|AW000112.1|AW000112
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACNCAGTGCCATCAAGATGCTCAATAGCAEST: gi|78104235|gb|DV522653.1|DV522653
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|5650012|gb|AI920372.1|AI920372
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|76925807|gb|DV170603.1|DV170603
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCAEST: gi|74245515|gb|DT653429.1|DT653429
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
EST: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGT TGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
genomic: CCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattc ... ttttgtgcagTGGCTGCTCATCTTACAGGAATACACAGTGCCATCAAGATGCTCAATAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGTAGAGGCTGAGAGGATATCTGTGGACCATGTTGCCCATCTCAAACCATCTGATGGTGGTTCAGCAGCAACTCAGTgtaagcattctactttgaagccctctctcaaaacaaatttatgggtcagtgggtgtcttccccgtggctttgctttctcaacaaatagtcatattatccgaggtatttttctggatagaaatgtactaaacgatgcttttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG