1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaactaggaaacacttactagtcaacgatgttatacacttcgagaacatcaagtattaacttggctgcttgctgtcctgatttcag
species | Zea mays |
transcript | GRMZM2G027851_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|71761590|gb|DR959527.1|DR959527
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: ACTGGATTGCTCAGTGCCTACATAATTAGGAAGCTATATATAGGAAG GCATCCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|71446906|gb|DR827956.1|DR827956
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|71758416|gb|DR956353.1|DR956353
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: CTACATAATTAAGAAGCTATATATAGAAAG ACATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|78074782|gb|DV503216.1|DV503216
genomic: CTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: CAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|211100374|gb|FL186479.1|FL186479
genomic: CAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|89755589|gb|DY685958.1|DY685958
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|74239374|gb|DT647288.1|DT647288
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: CAGTGCCTACATAATTAAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCEST: gi|33100450|gb|CF060410.1|CF060410
genomic: CAGTGCCTACATAATT-AAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAEST: gi|76936699|gb|DV174843.1|DV174843
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGA
EST: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
genomic: ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaa ... ctgatttcagGCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGgtgagtcaaactaggaaacacttactagtcaacgatgttatacacttcgagaacatcaagtattaacttggctgcttgctgtcctgatttcag
- - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - AGAAGC