1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCAGAACTTCGATCTTAACCACATCGATGTAGCCGTTGTGCTGAATTTCTTGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtttcttaattctgatactcccatttacacactgtacaactgtcttgattggatcagtcggcagccaaaactaatgttctttattatatataccattggcag
species | Zea mays |
transcript | GRMZM2G027851_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTT ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGEST: gi|76013010|gb|DT940180.1|DT940180
genomic: GGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtt ... ccattggcagACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG
EST: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTT ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGEST: gi|71446906|gb|DR827956.1|DR827956
genomic: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtt ... ccattggcagACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG
EST: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTT ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAGEST: gi|211100374|gb|FL186479.1|FL186479
genomic: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtt ... ccattggcagACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG
EST: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTT ACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG
genomic: TGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtt ... ccattggcagACTGGATTGCTCAGTGCCTACATAATTAAGAAGCTATATATAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGAACTTCGATCTTAACCACATCGATGTAGCCGTTGTGCTGAATTTCTTGGGAAACTTCTGTTACTTATTCGTGTCAAGCACCTTACTTGGAGTGTTTgtaagttgtttcttaattctgatactcccatttacacactgtacaactgtcttgattggatcagtcggcagccaaaactaatgttctttattatatataccattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG