1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGCGTGATCCAATTGAAAGGGTTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgtttagatcgtcattaagagtacaaatgtatgacagacagaagtgcatggcctcggacatcctttatctgcaagacagaagaaaattttaactgctgtgttgaattccttaaggcaatctctttgttttccattag
species | Zea mays |
transcript | GRMZM2G027627_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|76019405|gb|DT946575.1|DT946575
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|91876001|gb|EB405958.1|EB405958
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|211508254|gb|FL470985.1|FL470985
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|78117770|gb|DV536157.1|DV536157
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|211508253|gb|FL470984.1|FL470984
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|211505906|gb|FL470982.1|FL470982
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCGEST: gi|211508252|gb|FL470983.1|FL470983
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
EST: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAG GACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
genomic: TTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgttta ... tttccattagGACATGGAGAAGGAGATCAGGAAGCAAGTCGACGCTGCCATTGCTAAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCGTGATCCAATTGAAAGGGTTAGGAAGCTCATGTTGGTCCATGAGTTCGCAACGGCCCAAGAGCTAAAGgtattgtttagatcgtcattaagagtacaaatgtatgacagacagaagtgcatggcctcggacatcctttatctgcaagacagaagaaaattttaactgctgtgttgaattccttaaggcaatctctttgttttccattag
- - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT