1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGGGCTTCAGTAAAGCAACCTAACATTTTGTTGCCGACCTTGTTTATATTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtatgaaaaattattacggcattaatctatgatgtgtcttatcttcatggcttattcgattactctttggctgttgcattggagttaattgcaatc...
species | Zea mays |
transcript | GRMZM2G027603_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCAT CACAAATAAGCTTGGATTCACTCCGGAGTTTCTAGGGCGCGTGAAGCTTGTEST: gi|91877028|gb|EB406985.1|EB406985
genomic: TTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtatga ... tatattccagCACAAATAAGCTTGGATTCACTCCGGAGTTTCTAGGGCGCGTGAAGCTTGT
EST: TTTCTTTGGGAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCAT CACAAATAAGCTTGGATTCACTCCGGAGTTTCTAGGGCEST: gi|84969928|gb|DW468324.1|DW468324
genomic: TTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtatga ... tatattccagCACAAATAAGCTTGGATTCACTCCGGAGTTTCTAGGGC
EST: CAGTCAGATTCTGCTATGTTTTTCTTCAT CACAAATAAGCTGGGATTCACTCCGGAGTTTTTAGGGCGCGTGAAGCTTGT
genomic: CAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtatga ... tatattccagCACAAATAAGCTTGGATTCACTCCGGAGTTTCTAGGGCGCGTGAAGCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGCTTCAGTAAAGCAACCTAACATTTTGTTGCCGACCTTGTTTATATTTCTTTGGCAAGCAACACCGCAGTCAGATTCTGCTATGTTTTTCTTCATgtatgtatgaaaaattattacggcattaatctatgatgtgtcttatcttcatggcttattcgattactctttggctgttgcattggagttaattgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa