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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcattttacattctgtttgtgatttgcg...

Basic information

species Zea mays
transcript GRMZM2G027282_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcattttacattctgtttgtgatttgcg-
||| ||||| ||||| ||||| || || || |||||||||||||| ||||| || || || || |||||||||||| | ||||||||||| ||||||||||||| | | |   |  |  ||   | ||  |       |    | |||    ||    |   ||  || |||  |  | | ||  || | | |   |    
GTACGGACCACCTGGCACTGGAAAGACCCTAATGGCTCGTGCATGTGCTGCCCAAACTAACGCCACATTTCTGAAACTTGCTGGTCCACAGCTTGTCCAGgtagcttactttctgtgataaggctgttgaaagctatgtgatatccctgctcctgctaattcaaatatatgaa-agctcaaatgatgctagggtccttaag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g21660.1 (Oryza sativa), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacagatgctagggt----tcctaaggctctccaactaaccatttgagcattttacattctgtttgtgatttgcg
||||||||| ||||| |||||||| || ||| | || | |||||  ||| | |||||||||||||||||||| ||  |  ||||||||||||||| |  ||||  ||  |     |   ||||  || |   |  ||  ||       |  |   ||| | ||   || ||  || || |   | ||||||| | |   |    
GTATGGACCACCTGGAACTGGGAAGACACTCGTTGCCCATGCATTTGCTTCCCAGACAAATGCAACATTTCTTAAGCTAACTGGTCCACAACTTGCCGTGgtaattatcttgcaacagaaaatccatcacctaactgtcagtaaaatattgttgtgctattcatgaaatcaggtgtgcgt---atattctgtatctttctcat-

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G38030.1 (Glycine max), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcatt-ttacattctgtttgtgatttgcg
||||||||| || ||||||||||||||  | ||||||||||| || || |||||||||||||| || ||||||||||||||||| || ||||| ||||||||| |  | |  ||   |    ||      ||  ||| |     |  ||    | |  | | |   |||  | |||| ||||||  |  |     ||| | 
GTATGGACCTCCAGGGACTGGGAAAACATTGATGGCTCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCTGGCCCTCAACTGGTCCAGgtatgacaatttatttatagtctaagcatgactaatgattctactattacatgtttgtatcaactaattatatcattattacatgttcgtaacattttcc-

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G29250.1 (Glycine max), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgta-ggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcattttacattc-tgtttgtgatttgcg---
 |||||||| || ||||||||||||||  | ||||| ||||| || || |||||||||||||| || |||||||||||||| || || ||||| ||||||||| |  |||| | | |  |   |   || |    ||  ||   ||  ||||        |||||  |||  |   ||  |  ||  |       | ||      
ATATGGACCTCCGGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGgtatgacaatttatttctagtttttctttttctccattatata-tttgtaag----catgactaatgattccattgttacatgtttgtaccaactaattatacca

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G05530.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatat-tatacagatgctagggt-----------tcctaaggctctccaactaacc---atttgagcattttacattctgtttgtgat--ttgcg--------------------------------------------------------------
|||||| ||||| |||||||| |||||  | ||||||||||| ||||| |||||||| ||||| || || || |||||||| || || ||| | |||||||||  ||  || ||   | | |||||| ||||    |   ||  |           || ||   ||||  | |    |   || | ||  |||    |||||      ||  || |                                                               
GTATGGTCCCCCAGGGACTGGTAAAACTTTAATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCAATTGGTCCAGgtatatatatatatatat-atatatatatatatgagtatcagattcaattctcatctcttagaactctttaccctgtctggatataagattttagtgttctggcaacaataattacatgtgacgagctataatgatacttgattgtaatgacatgatgacatatccaatttatatacag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 6
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacag-atgctagggttcctaaggctctccaactaaccatttgagcattttacattctg--tttgtgatttgcg-
|||||| || || |||||||| |||||  | ||||||||||| || ||||||||||||||||| || ||||||||  | |||||||||||||||||||||||  ||    ||   | ||||| ||||  ||||| ||| | | ||   |  |  | |   |     | ||   |  ||| | |||  |  || || ||      
GTATGGGCCTCCAGGGACTGGCAAAACATTAATGGCTCGTGCTTGTGCTGCACAGACAAATGCCACTTTTCTGAAGCTAGCTGGTCCACAACTTGTCCAGgtcagtgtccaa---catgaaa-atatcttacagcatgatcgtgtgtgtgtgtgtgttttaaatttctttgatgattttcaaattgagcattggtaatccagag

upper sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0060g02260.t01 (Vitis vinifera), 5'ss of exon 5
GTATGGACCCCCTGGGACTGGGAAAACGCTCATGGCTCGTGCATGCGCTGCACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaattaaatccgtgaaatatattatacagatgctagggttcctaaggctctccaactaaccatttgagcattttacattctgtttgtgatttgcg---
||||||||| || |||||||||||||| || ||||| ||||||||||| || || |||||||| || ||||||||  |||| || || |||||||||||||| ||  |||   ||  |    |   || | ||         |||  |      || | |   |   ||      ||    || |||    |  | || |   
GTATGGACCTCCAGGGACTGGGAAAACTCTGATGGCCCGTGCATGCGCGGCTCAAACAAATGCCACTTTTCTGAAGCTGGCAGGCCCTCAACTTGTCCAGgtgggatattct-tcatttgttttccttcttcattcttatttgttatttgatgccttctagggattcttgacttgttcagtatcctgaaaat--tctgaggtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67022292|gb|CO451041.1|CO451041
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|62550265|gb|DN830685.1|DN830685
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|211086754|gb|FL006906.1|FL006906
EST:     CCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|61118362|gb|DN559323.1|DN559323
EST:     ATGC-ACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: ATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|60397914|gb|DN230730.1|DN230730
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|6527001|gb|AW216226.1|AW216226
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTT
EST: gi|37400681|gb|CF637697.1|CF637697
EST:     TGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: TGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|61118361|gb|DN559322.1|DN559322
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|60401214|gb|DN234021.1|DN234021
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|20802819|gb|BQ293869.1|BQ293869
EST:     AGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: AGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|31357355|gb|CD441712.1|CD441712
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|109637342|gb|EC590887.1|EC590887
EST:     GTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: GTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|71448750|gb|DR829800.1|DR829800
EST:     CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGGTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|67041966|gb|CO468221.1|CO468221
EST:     ACAGACTAATGCAACATTTCTGAAATTGGCTGGTC-ACAACTTTGTC-AG                         ATGGTCATTGGTGATGGNAGCTA-GCTTGNTANAGATGCTTTTCAGCTTG
genomic: ACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTT-GTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGG-AGCTAAGCTTGTTAGAGATGCTTTTCAGCTTG
EST: gi|5268612|gb|AI770576.1|AI770576
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAN                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|6056527|gb|AW090917.1|AW090917
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|211086756|gb|FL006908.1|FL006908
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|37401285|gb|CF638005.1|CF638005
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|149089441|gb|EE178682.2|EE178682
EST:     CACAGACAAATGCAACATTTCTGAAAATGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGGTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|31355810|gb|CD440167.1|CD440167
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|6538999|gb|AW225138.1|AW225138
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
EST: gi|60352075|gb|DN219048.1|DN219048
EST:     CACAGACTAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAG                         ATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT
genomic: CACAGACAAATGCAACATTTCTGAAATTGGCTGGTCCACAACTTGTCCAGgtaggtaatt ... attgtttcagATGTTCATTGGTGATGGAGCTAAGCTTGTTAGAGATGCTTTTCAGCTTGCT