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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttcttgctagaaatgtcttatgctttgttagatatgaggtctgtttctgcaaatataaaaatacacatgccacccatgcttgcagactgcagtg...

Basic information

species Zea mays
transcript GRMZM2G026767_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0001g00180.t01 (Vitis vinifera), 5'ss of exon 5
GCAGGGTTACTCCAGAAAGTGTCATTTTCAGTTTTGGCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttcttgctagaaatgtcttatgctttgttagatatgaggtctgtttctgcaaatataaaaatacacatgccacccatgcttgcagactgcagtg-------
| ||||||||||| |||||||| || ||||| ||||| ||||||||||| || || || ||||| || |  || || ||    ||||||||| | |||  |      | |||| | ||||  |       || ||| | ||    | |    | |    |||     ||| || ||  ||   ||        
GAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATgtaagtgttttgtga------tgttatacattgtgcgtgcgtgtgtgtgtgtgtgtgtgtgttgtga-atctctgctttttatggttacatgctattgttctccaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937605|gb|DV175198.1|DV175198
EST:     GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT                         GCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
EST: gi|76937335|gb|DV175108.1|DV175108
EST:     GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT                         GCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATGAGAGGCAGAAACATCCAAGCAGTTATGGATTCACAT
EST: gi|149098700|gb|EE184712.2|EE184712
EST:     GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACAT                         GCGCTTGATATCATG
genomic: GCACTGTACTTCTTGACCTTCTCAGTGGGAAACGCATACCGCCTTCACATgtaagtttct ... ttgcatgcagGCGCTTGATATCATG