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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAATCTTGCTTCTCAGTGTCTACAATATGAGCCAAGAGATCGTCCTGACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgtttattcctctttatttcatatttgactcggtaaaagtatttgtgaaaggagtatatttaatgtcctagcatcacactggttcttgctaat...

Basic information

species Zea mays
transcript GRMZM2G026767_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026767_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 5'ss of exon 6
GGTGAATCTTGCTTCTCAGTGTCTACAATATGAGCCAAGAGATCGTCCTGACATAAAAAAGTTGGTTTCCATTCTGGAGCCTTTGCAGAAAAAAATAGAGgtaaccatgtttattcctctttatttcatatttgactcggtaaaagtatttgtgaaaggagtatatttaatgtcctagcatcacactggttcttgctaat-----
|||| ||||||||||  | ||  |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||  |||||||||| | ||||  |||||||   |   || ||   ||  ||||  | |||| |   ||  |  |||   |  ||| || || ||  |  |   |  || |  ||      |  |  |     
GGTGGATCTTGCTTCAAAATGCTTACAGTATGAACCAAGAGATAGGCCTGATATTAAAAAGTTGGTTTCCATTCTTCAGCCTTTGCAAACAAAATCAGAGgtattaacacttcttttgctc-attttttgtttgtc---gtggagatatggatataagtag-attttgcaaattgcaatatgagtctatgatatatttgtctgga