1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGGTGGTCTGATATGTTCTCGTGCATGATTGCTAAGGCCACAGTCCTAGAGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgagtgccaaacagctcctttccatgggcttgatcatatatgcacatgtattttatagtggccactgactgcagtgttcctgaaatactttgtaaactcaaaatctgcattttgcttgggtgcaacag
species | Zea mays |
transcript | GRMZM2G026643_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022955|gb|FL081004.1|FL081004
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022960|gb|FL081009.1|FL081009
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211456527|gb|FL289846.1|FL289846
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022956|gb|FL081005.1|FL081005
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: GACATCTGGCATTGCAGGAAGTANGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022959|gb|FL081008.1|FL081008
genomic: GACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022962|gb|FL081011.1|FL081011
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022953|gb|FL081002.1|FL081002
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: GAGGTGACATCTGGCATTGCMGGAAGTTGGGAATGGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022958|gb|FL081007.1|FL081007
genomic: GAGGTGACATCTGGCATTGCAGGAAG-TAGGAAT-GGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211456521|gb|FL289840.1|FL289840
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022951|gb|FL081000.1|FL081000
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211418991|gb|FL080999.1|FL080999
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022963|gb|FL081012.1|FL081012
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211456524|gb|FL289843.1|FL289843
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|211022957|gb|FL081006.1|FL081006
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|149072468|gb|EE160744.2|EE160744
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCEST: gi|50333151|gb|CO528277.1|CO528277
genomic: AGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
EST: GCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTG ATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
genomic: GCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgag ... ggtgcaacagATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGTGGTCTGATATGTTCTCGTGCATGATTGCTAAGGCCACAGTCCTAGAGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCTGCTGCTGgtgagatgagtgccaaacagctcctttccatgggcttgatcatatatgcacatgtattttatagtggccactgactgcagtgttcctgaaatactttgtaaactcaaaatctgcattttgcttgggtgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT