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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgccctgctcatttatctcgtggatgacttgaaaaaaaacgaggtttggattctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag

Basic information

species Zea mays
transcript GRMZM2G026470_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026470_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 5'ss of exon 6
ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgccctgctcatttatctcgtggatgacttgaaaaaaaacgaggtttggattctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag
|||||||||| |||||||||||||| || ||||| |||||| |||| ||  |  | || || ||||| ||||||||||| ||||||    | |||   |||||    |     |||  || | |  | | | ||| |  |  ||    ||     ||  |  ||||| | |   |   |                  
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCTTGCCTGCTCCGACAGCTCGTGAAGCAATCCAGTACTCTATgtaa----gtcctaaacattt--tgcagcattgatgtgcatattacc-atgttggattgttgatgttcgatgatccaatttgttgtcttattttcag------------------

upper sequence: GRMZM2G026470_T01 (Zea mays), 5'ss of exon 6
lower sequence: EDP02064 (Chlamydomonas reinhardtii), 5'ss of exon 4
--------------ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgccctgctcatttatct----cgtggatgacttgaaaaaaaacgaggtttggatt--ctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag
              |||||||||||||| |||||||||||| |||  |||||||||||   || |  |  |||    | |   || || ||||  ||   || |||   || ||           ||||| |    || | ||   | |||   || |   | |  |    ||||      || | | |   || | |                   
GTTCTTCGAGGACTACAAGAAGAACGAGCACAAGGAGGTGGTCGTGGACGACTTCCTGGGTGCTGAGGAGGCCAAGAAGGTGGTCAAGGACTCGCTGgtgagacgcagggcgcagcggcgaggggcgtgggttgtgtgcagaatggc-aggccagggtcagccgcaagctagcatcgtcgtgtttagtcccagaacgt-------------------

upper sequence: GRMZM2G026470_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ33440 (Selaginella moellendorffii), 5'ss of exon 7
ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaa---gtcgccctgctc---attta-tctcgtggatgacttgaaaaaaaacgaggtttggattctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag
||||||||||||||||||||   ||||| || |||||||||||||| || |     |||    | || |||||| | ||||||| |    |  | | ||      ||  | ||||       |    | |||| || ||  |       ||   |||||| |   |  |                                   
ACAAGAAGAACGAGAACAAGACCGTGGCTGTGAACGACTTCCTGCCAGCAGAAAACGCCGTGCAGGCGATCCAGCATTCCATgtgagtgtggggacttgagtgggatacactctcactcgctagcgtagaaaacactagactaaagccgtgattctctgcttgtttcag-----------------------------------

upper sequence: GRMZM2G026470_T01 (Zea mays), 5'ss of exon 6
lower sequence: EFJ27219 (Selaginella moellendorffii), 5'ss of exon 7
ACAAGAAGAACGAGAACAAGGAGGTGGCCGTCAACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaa---gtcgccctgctc---attta-tctcgtggatgacttgaaaaaaaacgaggtttggattctgggactctgcattcgtacgtgttgacatggatcttgttgcttctgtacgtgcag
||||||||||||||||||||   ||||| || |||||||||||||| || |     |||    | || |||||| | ||||||| |    |  | | ||      ||  | ||||       |    | |||| || ||  |       ||   || ||| |   |  |                                   
ACAAGAAGAACGAGAACAAGACCGTGGCGGTGAACGACTTCCTGCCAGCAGAAAACGCCGTGCAGGCGATCCAGCATTCCATgtgagtgtggggacttgagtgggatacactctcactcgctagcgtagaaaacactagactaaagccgtgattctttgcttgtttcag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78023075|gb|DV491462.1|DV491462
EST:     AATGACTTCTTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|28984521|gb|BQ539133.2|BQ539133
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|71331880|gb|DR802818.1|DR802818
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|62550248|gb|DN830668.1|DN830668
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGT-TC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|78121801|gb|DV540185.1|DV540185
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGGGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|84908555|gb|DW404433.1|DW404433
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGT-TC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|5499294|gb|AI855161.1|AI855161
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
EST: gi|60354156|gb|DN221129.1|DN221129
EST:     AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCAT                         GGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC
genomic: AACGACTTCCTGCCCGCCGCCGCTGCCCGCGAAGCCATCCAGTACTCCATgtaaagtcgc ... gtacgtgcagGGACCTGTACGGCCAGTACATCATGCAGACCCTGCGGCGGTAGAGCGTGTC