1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATGAATGAAGACTATCTCTGTGCCAAACTACACTTAGTAGATCTTGCTGGATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgcttcttgtctgtccaaacccttagcctatgtatttatttctatgccaaattaaaggctattttatacttcgtgacattag
species | Zea mays |
transcript | GRMZM2G026218_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAG GTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCT-EST: gi|60352331|gb|DN219304.1|DN219304
genomic: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgc ... gtgacattagGTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCTC
EST: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAG GTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCTCEST: gi|211200522|gb|FL446541.1|FL446541
genomic: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgc ... gtgacattagGTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCTC
EST: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAG GTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCTCEST: gi|211018238|gb|FL446510.1|FL446510
genomic: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgc ... gtgacattagGTGTTCACATCAACCGAGGACTTCTCGCTCTCGGCAATGTCATAAGTGCTC
EST: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAG GTGTTCACATCAACCGAGGACTTCTCGCTCTCGGNCAATGTCATAAGTGCT
genomic: ATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgc ... gtgacattagGTGTTCACATCAACCGAGGACTTCTCGCTCTCGG-CAATGTCATAAGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAATGAAGACTATCTCTGTGCCAAACTACACTTAGTAGATCTTGCTGGATCAGAACGGGCTAAGAGAACTGGTTCAGATGGCCTGCGCTTCAAGGAAGgtatgcttgcttcttgtctgtccaaacccttagcctatgtatttatttctatgccaaattaaaggctattttatacttcgtgacattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA