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ATCATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatcagctgaaattatcattttttaagaatgaatcagaaactattagaggtgggcctatttgttcaactaaaattattgaaaaacttccagtag...
species | Zea mays |
transcript | GRMZM2G025854_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACCCCTGCTGTATCTGCEST: gi|211456112|gb|FL153033.1|FL153033
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGC
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|211022165|gb|FL153038.1|FL153038
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|211456113|gb|FL153034.1|FL153034
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|211022172|gb|FL153045.1|FL153045
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAEST: gi|211024619|gb|FL153052.1|FL153052
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|211456114|gb|FL153035.1|FL153035
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|211022173|gb|FL153046.1|FL153046
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|50333167|gb|CO528293.1|CO528293
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|74238594|gb|DT646508.1|DT646508
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTTCGTAAA-GAAEST: gi|211022178|gb|FL153051.1|FL153051
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATT-CGTAAAAGAA
EST: TCATAAAGATTGCAGCTGGAAATGGGAGTTCAGAGGATCATAGTTGGCAG GGAATGGTCTACTGGTCA-CACCTGCTGTATCTGCTGTAATTCGTAAAAGAEST: gi|211022177|gb|FL153050.1|FL153050
genomic: TCATTAAGATTGCAGCTGGAAATGG-AGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagG-AATGGTCTACTG-TCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTEST: gi|211022175|gb|FL153048.1|FL153048
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCT
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTNAAAGAAAEST: gi|211022168|gb|FL153041.1|FL153041
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAAEST: gi|32943498|gb|CF048317.1|CF048317
genomic: ATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
EST: GGAGTTCAGAAGATCATCGTCGGCAG GAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
genomic: GGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatc ... ttgtctgcagGAATGGTCTACTGTCAACACCTGCTGTATCTGCTGTAATTCGTAAAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATCATTAAGATTGCAGCTGGAAATGGAGTTCAGAAGATCATAGTTGGCAGgtaaggaatcagctgaaattatcattttttaagaatgaatcagaaactattagaggtgggcctatttgttcaactaaaattattgaaaaacttccagtag
- - - - - - - GCAGCT
- - - - - - - - CAGCTG
- - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - AGATCA