1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGACAAAGCTGAGGCAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccaccatactcattatggatcaatagcagccctggggtttttgatcttgacgacggtaattgtatttcctgccag
species | Zea mays |
transcript | GRMZM2G025528_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|12047316|gb|BF729455.1|BF729455
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: ACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|148957676|gb|EC903790.2|EC903790
genomic: ACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAAEST: gi|148953239|gb|EE152723.2|EE152723
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAA
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|8577359|gb|BE129996.1|BE129996
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|78180005|gb|DV550378.1|DV550378
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|32849972|gb|CD989653.1|CD989653
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: ACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGCEST: gi|148982279|gb|EE028228.2|EE028228
genomic: ACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTTCGCGGGC
EST: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAG GTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTT
genomic: CAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccacca ... ttcctgccagGTATTCGGTTCAAACACCTTCATCGGGCTGGGGATCGTCTTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGAGGAGAGTGGAGCCTCTGGAATCCGGCAACCTGACAAAGCTGAGGCAGGCACTGCAGAGTACCTCATTGAGCTTGAAGAACGGCGATCAATTAAGgtaaccaccatactcattatggatcaatagcagccctggggtttttgatcttgacgacggtaattgtatttcctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC