1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctcacactagtggatctgactgcttttggcacaatttcttgttgatttgcattgtagcccattgtccagttaaaaaagaactttagattatgag...
species | Zea mays |
transcript | GRMZM2G024690_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTCEST: gi|88756990|gb|DY541131.1|DY541131
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTC
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTCEST: gi|148931986|gb|EC875260.2|EC875260
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTC
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTEST: gi|91870315|gb|EB400812.1|EB400812
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTT-GGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATT
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTCEST: gi|78117592|gb|DV535979.1|DV535979
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTC
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTCEST: gi|149104180|gb|EE289614.2|EE289614
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTC
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTCEST: gi|211453580|gb|FL021064.1|FL021064
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGGTGTTTCTTATAGCTGCTACAACATTC
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACT-CCT CATTTTTGGGTTTCA-TTTCAATGGGTGTTTCT-ATAGCTGCTACAACATTEST: gi|211453582|gb|FL021066.1|FL021066
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTTGGGTTTCAATTTCAATGG-TGTTTCTTATAGCTGCTACAACATT
EST: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCT CATTTTTTGGGTTTCAATTTTCAATGGTGTTTTCTTATAGCCTGCTACAAC
genomic: CTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctca ... tttgaaccagCATTTTT-GGGTTTCAATTT-CAATGGTGTTT-CTTATAGC-TGCTACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCTATTTGGGAGACACTTCCTgtaagtctcacactagtggatctgactgcttttggcacaatttcttgttgatttgcattgtagcccattgtccagttaaaaaagaactttagattatgag
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaagaa