Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGGCAAAAAGGATGATTTGATGGTGAAAGACAAAACTGGCTTAACTCCAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTCgtaagtaaaattaccatgacatttatattttgtgatctacttgaagtcctgtttttccagcatctttagagtcaagagtcccaatcctagaattaccatc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G024437_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 5'ss of exon 5
GGTTGGCAAAAAGGATGATTTGATGGTGAAAGACAAAACTGGCTTAACTCCAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTCgtaagtaaaatta-ccatgacatttatatttt-gtgatctacttgaagtcctgtttt-tccagcatctttaga-gtcaagagtcccaatcctagaattaccatc
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GGCTGGCAAAAAGGATGACTTGATGGTGAAGGATAAGACTGGTCTAACTCCAGCACAGCTTGCTGCTGATAAGAGTCATCGGCAAGTTGCATTTTTTCTTgtaagtaacatgaaccatggcatttctgtttttgtattatagccattcttttgtagagcccaatgcattaagccattaacagttcatctactagagattc----
upper sequence: GRMZM2G024437_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 6
GGTTGGCAAAAAGGATGATTTGATGGTGAAAGACAAAACTGGCTTAACTCCAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTCgtaagt-----aaaattaccatgacatt-tatattttgtgat-ctacttgaagtcctgtttttccagcatctttagagtcaagagtcccaatcctagaattaccatc
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GGCTGGCAAGAAGGAAGATCTTATGGTGACTGATAATACAGGCCTGACTCCAGCACAGCTTGCTTCTGATAAGAATCACAGACAAGTTGCTTTTTTCCTTgtaggtgttttataatcaacatagtttgatttgatcagtaatgccatttgaatggaagcttgcttcccatcttt----tcaaaattttccctcccccaatgatt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32823467|gb|CD963189.1|CD963189EST: CAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTC GACAACGCTAGAAGGGTACCATGACAGAGGATGTGGTGCGAACACCAGATT
genomic: CAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTCgtaagtaaaa ... atattttcagGACAACGCTAGAAGGGTA-CATGACAGAGGATGTGGTGCGAACACCAGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGGCAAAAAGGATGATTTGATGGTGAAAGACAAAACTGGCTTAACTCCAGCACAGCTTGCTGCCGATAAGAATCATCGGCAAATTGCGTTTTTCCTCgtaagtaaaattaccatgacatttatattttgtgatctacttgaagtcctgtttttccagcatctttagagtcaagagtcccaatcctagaattaccatc
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