Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag

Basic information

species Zea mays
transcript GRMZM2G024315_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g43090.1 (Oryza sativa), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 || ||||||||||||||||| || ||||| ||| | | ||| |||||||| || || |||||||||| ||||||| ||||||||||||||||| |||||             || |||||   | | |  |||| |||  | | |  ||| | ||    ||||     ||     |  | |||| | ||| |    || |||                    
GGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTGgta-------------cactctactcta-agtgccattccttgatct-gcagcatacaattactttcagttacttaggtatgaactttgttttattct--ttccag--------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G40860.1 (Glycine max), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatat--catttctttcttttgttgcaaaaaaaacatttcttggtctgcatca--aaatctttttcttagttcacttacagattttactttggcttgtcag
 ||| | || ||||||||||||||||| ||||||||||| ||||| |||||||| || | ||||||    ||| | ||| || |  |       |||||||  || |||    || | ||| | |   |    |||  | |    ||||||  ||  | | |||      |    || |  || |||   ||||   |                             
GGAACTTGGTATTGGAATTGTACCATATAGTCCTCTTGGTCGTGGCTTTTTTGGCGGCAAAGGAGTTGTGGAAAATGTGCCTACAAATAGCTCCCTGgtatatagcattttagca-tgtacataattctgctgcataccatggaattgttgataatgacaaattatcaaatagcaatgatcaattctcaatcttgagt-----------------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G43360.1 (Glycine max), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||  | |||||||||||||||||||| || |||||||| || || ||||||||||| | ||||||    |||   |||||  | |        |||||||  | |||| |   |||  |    | ||||  |||  |    | || |          |||||  ||   ||  |  | |||                                         
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAACTGTGTCAACAGTTAGCTCCCTGgtat--aatatttaattagtaaataataaaataatattgatcaactctgat----------catttgctgcaatgtgttcatatcag---------------------------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G40880.3 (Glycine max), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctac-ctcagaatatcatttctttcttttgt-tgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
|||  | |||||||||||||||||||| || |||||||| || || ||||||||||| | ||||||    ||| |  || ||||     |    ||||||  |  | ||  ||| | ||   ||    ||||  |    || ||   | || ||||  |  |  |  | | |    | | ||||  |   | |  |                             
AGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGGTGGCAAAGGAGTTCTGGAAAATATGCCTGCAAGTACAGTCCTGgtacaatattttagcactgactctgcttcttatattgtagaatttttccatgtgaaaaattaggagataatag-caaattaacaatccatccttcatcttg---------------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G40680.1 (Glycine max), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||| | || |||||||| ||||||||||| || ||||||||||| ||||||||||| |  |  ||   ||||    |  ||||  |   |  ||||||||  |   || |  |  |||  || | || |   || |  |  ||  |||   |  || ||| ||||    | || ||                                              
GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTTGGTGGCAAGGCTGTCGTAGAAAGTATACCTGCAAACAGTTTTCTGgtatggac--ttaaacctttctttctgacaacac--ttgcccttgttcattgttcactaa-catctctt----tccaccag---------------------------------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G27130.1 (Glycine max), 5'ss of exon 6
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||  | |||||||||||||||||||| || |||||||| || || ||||||||||| | ||||||    |||   |||||  | |    ||                                                                                                                                   
GGAGCTTGGCATTGGAATTGTACCATATAGCCCTCTTGGTCGAGGCTTTTTTGgtggcaaaggagttctggaaactgtgtcaacag---ttag----------------------------------------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G30360.1 (Glycine max), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcat----ttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||| | || |||||||| ||||||| |||||| ||||||||||| ||||||||||| |  || || | ||||    |  |||| ||   | ||||||||| |||     |     | |   | |  | ||||     |  | |   |  | |     ||||  ||   | || | | |     |  |  |   | |  |     |      |   |   |  ||||
GGAACTTGGAATTGGAATAGTACCATTCAGTCCCCTTGGCCGTGGATTTTTTGGTGGTAAGGGGGTCATAGAAAGTATACCTGCAGACAGTTATCTGgtatgaagccaatagtttctgttttttaatacatcacgatatgatatggatcatagttttgaaaatgttatgttgttttccttg--tttctcataacaatatatggttaagcaacatcctttttcatcag

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g01960.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||  | ||||||||||| || |||||| |||||||||| ||||| ||||||||||| || |||||    |||    || ||||   ||   |  |||||| |  | ||| ||   | |   |     | |  ||  |      | |    ||| ||| |||  |  |    ||  |  || || |   |  | || |||                       
GGAGCTTGGCATTGGAATAGTTCCATACTGTCCTCTTGGTCGTGGATTTTTTGGTGGTAGGGGAGTTGTGGAAAGTTTGCCTGC---AT---ACTTGgtat-acattttgtcattttttttgtttctgttttcttaatgcaaaatatc-tgaaagaaatattcttcaggaaacaa-agtatattctgaatgctccattta-----------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g01990.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagt---attgacacagtctacc--tcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||| | || ||||| || || |||||||||||||| ||||| |||||||||||||| |  |  |     ||| |  || ||||  |   |  ||||||||    |   ||       | |||    |    ||| | |  | || | || || ||  || ||       || |||  |  | || | |||| ||   |||                           
GGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTCGGCCGCGGGTTTTTTGGTGGCAAGGCTGCAGGGGAAAATTTGCCTGCAAACAGTTTTCTGgtatgggatggaatatgtttggcctagtgattttgataccttccccttttcttcttacatgaataat-cacagtgatcta-acgagaaaccttttgttttatcatcag-----------------------

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g02020.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtcta--cctcagaata-tcatttctttct---------tttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag---------------------------
|||| | || ||||| || || ||||||||||||||||| ||||||||||||||||| |  |  ||  | ||| | | | ||||  |  ||   ||||| |  | | |   |    || |  | |  |  || |||||| ||  |         ||| | |  ||||| |   || | |  ||| || |   |  | |  | |  |   |   | || | | |  |  | |  |                            
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGTGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g02050.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtcta--cctcagaatatcattt------ctttcttttgttgcaaaaaaaacatttcttggtc---tgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag-------------------------
 ||| | || ||||| || || ||||||||||||||||| ||||||||||||||||| |  |  || |  ||| | ||| ||||  |   |   ||||||| ||       ||   |||   | |  | |||   |||      | ||  ||| | |  |  |    | || |    |   |||||    || |  | | |  ||  ||    || || ||  ||||   | |                          
GGAACTTGGGATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGTGGCAAGGCTGTTAGTGAAAATGTGCCTGCAAACAGTTTGCTGgtatgaatgcggtccaatttctggccttttgcatactcttttggattccttaatttttagtcatcatggtagttatgatccaggtgcattttgatatagtccctctttttctatgtgaattaaccatggcaaattaatggctgacctcttgtttgttatcag

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g01980.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtcta--cctcagaata-tcatttctttct---------tttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag---------------------------
|||| | || ||||| || || ||||||||||||||||| |||||||||||||| || |  |  ||  | ||| | | | ||||  |  ||   ||||| |  | | |   |    || |  | |  |  || |||||| ||  |         ||| | |  ||||| |   || | |  ||| || |   |  | |  | |  |   |   | || | | |  |  | |  |                            
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGCGGCAAGGTTGTTGATGAAAATGCGCCTGCAAACACTTTCCTGgtgtggaatctgacctatttccagccttttgtgtactcattttttgttccactaaactttctagtcaaaaacattattatggacctggatgattttgatatattcacctttgtcttacatatgaataagcatggcgaactgatgaccaaccttttgtcttatcag

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g01970.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAA-----TCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttt---tgttgcaaaaaaaacatttct-------tggtctgcatcaaaatctttttcttagttcacttacagattttactt--tggcttgtcag--------------------
|||| | || ||||| || || ||||||||||||||||| ||||||||||||||||| |  |  ||  | ||| | ||  ||||  |       ||  | ||| | ||    |     ||||||       | | |  ||| || |  |   | || |   |||||||||  |       ||||  |  |  | |  |||  ||| || |     | || |   | |  ||   ||   |                    
AGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTTGGACGTGGGTTTTTTGGTGGCAAGGCTGTTGATGAAAATGTTCCTGCAAACAGTTTCCTGgtgtggaaccagacctatttccagtcttttgtgtactcttttttgttgcactaatttttccgtcaaaaacattattatgggcctggttggttttgatagatttccctttgtgctacatctgaataagcatggtgaactgatggccaaccttttgtcttatcag

upper sequence: GRMZM2G024315_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0030g02060.t01 (Vitis vinifera), 5'ss of exon 5
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagt---attgacacagtctacc--tcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag
 ||| | || ||||| || || |||||||||||||| ||||| |||||||||||||| |  |  |     ||| |  || ||||  |   |  ||||||||    |   ||       | |||    |    ||| | |  | || | || || ||  || ||       || |||  |  | || | |||| ||   |||                           
GGAACTTGGAATTGGGATAGTTCCATACAGTCCTCTCGGCCGCGGGTTTTTTGGTGGCAAGGCTGCAGGGGAAAATTTGCCTGCAAACAGTTTTCTGgtatgggatggaatatgtttggcctagtgattttgataccttccccttttcttcttacatgaataat-cacggtgatcta-acgagaaaccttttgttttatcatcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14244154|gb|BG842002.2|BG842002
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|91878930|gb|EB408887.1|EB408887
EST:     TTTTGGTGGAAGAGGAGTGAAAGAACCAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTGGTGGAAGAGGAGTGAAAGAAC-AAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|93011652|gb|EB637172.1|EB637172
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|76014741|gb|DT941911.1|DT941911
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAA-TT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|78090110|gb|DV518484.1|DV518484
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71327902|gb|DR800585.1|DR800585
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|148929206|gb|EC874773.2|EC874773
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGTTGAATTTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71759316|gb|DR957253.1|DR957253
EST:     TTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|37386431|gb|CF630401.1|CF630401
EST:     AAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTGGGAGAAGACCAAGCAAATT
genomic: AAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71438898|gb|DR819948.1|DR819948
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|60399433|gb|DN232245.1|DN232245
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|211508458|gb|FL138869.1|FL138869
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|37382589|gb|CF628250.1|CF628250
EST:     GAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: GAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71430218|gb|DR811268.1|DR811268
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71430217|gb|DR811267.1|DR811267
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71438372|gb|DR819422.1|DR819422
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGA-CAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|60396046|gb|DN228916.1|DN228916
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|71327903|gb|DR800586.1|DR800586
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAG
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAG
EST: gi|149014830|gb|EE044532.2|EE044532
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATT
EST: gi|149014829|gb|EE044531.2|EE044531
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|148931634|gb|EC874774.2|EC874774
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
EST: gi|14204195|gb|BG837872.1|BG837872
EST:     TTTTTGGTGGAAGAGGAGTGAAAGAGCAAGTGTCTGCTGAATCTAATCTG                         CATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT
genomic: TTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 19

AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATTTATTTGCGAATGGAAGAACTGGCCAATAAGCACCAGTGCAGCCCTGCTC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 111

AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATTTATTTGCGAATGGAAGAACTGGCCAATAAGCACCAGTGCAGCCCTGCTC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 94

AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATTTATTTGCGAATGGAAGAACTGGCCAATAAGCACCAGTGCAGCCCTGCTC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 20

AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagta ... ggcttgtcagCATGGGATCCCAAGGTTTGCTCCAGAAAATTTGGAGAAGAACAAGCAAATTTATTTGCGAATGGAAGAACTGGCCAATAAGCACCAGTGCAGCCCTGCTC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATTGGGCATTGGAATTGTACCATACAGTCCTCTTGGCCGTGGGTTTTTTGGTGGAAGAGGAGTGAAAGAACAAGTGTCTGCTGAATCTAATCTGgtatcaagtattgacacagtctacctcagaatatcatttctttcttttgttgcaaaaaaaacatttcttggtctgcatcaaaatctttttcttagttcacttacagattttactttggcttgtcag

- - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC