1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GATGTGCAGTGTTTACCGCGTATGGTGCCCTGAGGCATGCTGCTGAAATGCGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgatgtctgataaatttgaggatctttcttttctccacttatttttttgggactatgaatgcacaaacaaacatgacccttcttcttccctcttttatcttaaaaaagcagttcttttattttgcag
species | Zea mays |
transcript | GRMZM2G024303_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTGTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|6021295|gb|AW066223.1|AW066223
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: GGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGAGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGEST: gi|8367688|gb|BE050633.1|BE050633
genomic: GGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTG-GGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGG
EST: CGGCCTGGTGATTCGGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|149001207|gb|EE038478.2|EE038478
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: AGCTGTGATTGGAGTGGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|71312652|gb|DR792844.1|DR792844
genomic: AGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|20299977|gb|BQ162920.1|BQ162920
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: CGGCCTGGTGATTCGGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|149076497|gb|EE165123.2|EE165123
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: GGGCCTGGTGATTCGGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|6020969|gb|AW065897.1|AW065897
genomic: -GGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|18660089|gb|BM500681.1|BM500681
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|20301156|gb|BQ164099.1|BQ164099
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: CGGCCTGGTGATTCGGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|60340906|gb|DN207879.1|DN207879
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: TGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGAEST: gi|148962894|gb|EE013828.2|EE013828
genomic: TGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
EST: GAGTTGAAGGGGTGGGGTCAAAG CTGTTTACAGATAGCAAAAGCCTTTGGGGCTTCCCAAGTCATTGCAGTGGEST: gi|71759582|gb|DR957519.1|DR957519
genomic: GAGTTGGAGGGGTTGGGTC-AAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGG
EST: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAG CTTTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
genomic: CGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgat ... tattttgcagCTGTTTACAGATAGCAAAAGCCTTTGGAGCTTCCCAAGTCATTGCAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGCAGTGTTTACCGCGTATGGTGCCCTGAGGCATGCTGCTGAAATGCGGCCTGGTGATTCAGTAGCTGTGATCGGAGTTGGAGGGGTTGGGTCAAGgtcagctgatgtctgataaatttgaggatctttcttttctccacttatttttttgggactatgaatgcacaaacaaacatgacccttcttcttccctcttttatcttaaaaaagcagttcttttattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG