1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAGGCTGAGATCAAACTGCTGAGGAAGAGCCTAACATTTAAAGCCACACCTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagttgatttacttcatgcagtgaggttcctgattatattgaaacaaatggttctgtgcggtttaatacatcctatttttctttttgaatagaaa...
species | Zea mays |
transcript | GRMZM2G023652_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGEST: gi|22819173|gb|BU499263.1|BU499263
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAG
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|60357341|gb|DN224314.1|DN224314
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|22819288|gb|BU499378.1|BU499378
genomic: CAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|21843366|gb|BQ703947.1|BQ703947
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|32833164|gb|CD972842.1|CD972842
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGEST: gi|26559955|gb|CA832190.1|CA832190
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAG
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAA- ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|87157517|gb|DY402306.1|DY402306
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|21809702|gb|BQ668020.1|BQ668020
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|32839274|gb|CD978955.1|CD978955
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCEST: gi|7217064|gb|AW563186.1|AW563186
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGC
EST: AAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGNTAGGTCGCCAAAGCTCGGCCGGCCCAAGCCAGCCEST: gi|31355396|gb|CD439753.1|CD439753
genomic: AAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|60356563|gb|DN223536.1|DN223536
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|32837723|gb|CD977401.1|CD977401
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGEST: gi|22542624|gb|BU093062.1|BU093062
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCG
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|24769732|gb|CA404861.1|CA404861
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCCEST: gi|31355088|gb|CD439445.1|CD439445
genomic: CCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
EST: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAG ATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
genomic: CTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagtt ... ggttttgtagATTCCCCCAACACGCGCTAGGTCGCCAAAGCTCGGCCGGCACAAGCCAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGCTGAGATCAAACTGCTGAGGAAGAGCCTAACATTTAAAGCCACACCTATGCCAAGCTTTTACAAGGAGCAGCCACCCAAAGTTGAGTTGAAAAAGgtactgagttgatttacttcatgcagtgaggttcctgattatattgaaacaaatggttctgtgcggtttaatacatcctatttttctttttgaatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG