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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATATTGGAAGTAGGTCCAGATGTTGAAATATTGGCGGATTGCCCTGTTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgttgctttttttttactagaatactgcaattgtcttcaaatggccaaactgagttctgatatatttctagtaaactagatttttagcatgag...

Basic information

species Zea mays
transcript GRMZM2G023528_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5714344|gb|AI944329.1|AI944329
EST:     AATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: AATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|78021493|gb|DV489880.1|DV489880
EST:     TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|37382875|gb|CF628406.1|CF628406
EST:     TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|78180241|gb|DV550614.1|DV550614
EST:     TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAAAAGAGTATTCAAAAGATCGGGTAAATGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|5804728|gb|AI979698.1|AI979698
EST:     TTCCTGTTGCCAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|91055148|gb|EB165566.1|EB165566
EST:     TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
EST: gi|60340407|gb|DN207380.1|DN207380
EST:     TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAG                         GAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC
genomic: TTCCTGTTGACAGACCCAGCATTACAATATCATTTGGGGAGGGTACTGAGgtttgtatgt ... atactttcagGAAGAAGAGTATTCAAAAGATCGGGTAATTGTTGCAGTGCGGCAAGGGAAC