1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTGGACCTAGATGTATTATTTTACCCCTGTCCTAAAAAAGGCCCAACATTCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATGgtatgcagacgtcctacataaattctgatattctattctgtgttagcacttcagatcatatttggttgctagcatctccacatccacatccacgtatgtt...
species | Zea mays |
transcript | GRMZM2G022866_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATG GTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAAEST: gi|71328184|gb|DR800730.1|DR800730
genomic: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATGgtatgcagac ... tctattgcagGTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAA
EST: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATG GTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATANAAEST: gi|50338487|gb|CO533613.1|CO533613
genomic: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATGgtatgcagac ... tctattgcagGTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAA
EST: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATG GTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAA
genomic: TCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATGgtatgcagac ... tctattgcagGTGGATCCAAACACAGGGGTCGCCATGTATGAATCCGATGACATCATAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGACCTAGATGTATTATTTTACCCCTGTCCTAAAAAAGGCCCAACATTCCGACCTAAAGTCCTCGAAATGGGTGGAAAGAAACAATTCCCTTACATGgtatgcagacgtcctacataaattctgatattctattctgtgttagcacttcagatcatatttggttgctagcatctccacatccacatccacgtatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA