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TTCGCGGGAGCCCAGATGTGAAATGGGAGAGCATCAAAGGACTGGAAAATGCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagttatttcttgctaaaagtaaaataaatctaaggagaattttaatatctcaacatgataattcttacagctgttatctgtttgctaatggta...
species | Zea mays |
transcript | GRMZM2G022777_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|91876817|gb|EB406774.1|EB406774
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|148933119|gb|EC876754.2|EC876754
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGEST: gi|31355560|gb|CD439917.1|CD439917
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGG
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|76933170|gb|DV173349.1|DV173349
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|211165539|gb|FL456882.1|FL456882
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|78109695|gb|DV528111.1|DV528111
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|149080059|gb|EE169077.2|EE169077
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|76280583|gb|DV020151.1|DV020151
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|211131749|gb|FL468282.1|FL468282
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|149106054|gb|EE291707.2|EE291707
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTTC-CTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGEST: gi|71297616|gb|DR784759.1|DR784759
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTT-CACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGG
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|148963213|gb|EE014191.2|EE014191
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|78121929|gb|DV540313.1|DV540313
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|78106806|gb|DV525224.1|DV525224
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|76281419|gb|DV020987.1|DV020987
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|67021064|gb|CO449813.1|CO449813
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|149035101|gb|EE155087.2|EE155087
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|8367772|gb|BE050717.1|BE050717
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|148963079|gb|EE014036.2|EE014036
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|30307202|gb|CD001875.1|CD001875
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|22472534|gb|BU037014.1|BU037014
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCCEST: gi|31355569|gb|CD439926.1|CD439926
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
EST: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAA ATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
genomic: GCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagt ... ctgttttcagATACTTCACTGGTCTCCTTTCTCCATGGAAAGGCATCTTACTTTTTGGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGCGGGAGCCCAGATGTGAAATGGGAGAGCATCAAAGGACTGGAAAATGCAAAACGCCTTCTAAAAGAGGCTGTTGTCATGCCCATAAAGTACCCAAAgtaagttagttatttcttgctaaaagtaaaataaatctaaggagaattttaatatctcaacatgataattcttacagctgttatctgtttgctaatggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggagaa