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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTTTACTCCTGGTCTGCCTGATGCTCAGGACATCACAATGGAGCCACAAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcattttcacgtaatattatgaagacagtgtgttcatgtccccacaagttcatcgagaatcctgttaggtggtatgagtgacactcctcagata...

Basic information

species Zea mays
transcript GRMZM2G021742_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G021742_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g13990.3 (Oryza sativa), 5'ss of exon 5
AACGTTTACTCCTGGTC---TGCCTGATGCTCAGGACATCACAATGGAGCCACAAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtac--atgcattttcacgtaatattatgaagacagtgtgttcatgtccccacaagttcatcgagaatcctg-ttaggtggtatgagtgacactcctcagata
    ||||||||||| |   ||   |||||||| || | ||||||||||   || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||   ||||   |   | || || |  |    | |  | |  ||     | ||  | || | |  |   | ||     |  |   |   |  |    ||| 
---TTTTACTCCTGGACAGGTGGTGGATGCTCAAGATACCACAATGGAGGAGCAGGGTCCAAAAGTAGTTGCTCCAACACCTGAGCAAATCACAGCTATCAAGgtactattgcaagct-gtgcaa-ataactatattatttagctactgcattaaaaaaatgattgtggctatggcttctactggcttgttagtatgctcttgat-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969289|gb|EE020059.2|EE020059
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|91053554|gb|EB163972.1|EB163972
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|50326107|gb|CO521233.1|CO521233
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|60343545|gb|DN210518.1|DN210518
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACT
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACT
EST: gi|71446950|gb|DR828000.1|DR828000
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|60356065|gb|DN223038.1|DN223038
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|76918345|gb|DV167252.1|DV167252
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|4226387|gb|AI396494.1|AI396494
EST:     AAGGTCCTAAAGTAGATGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATG
EST: gi|113701906|gb|EE679410.1|EE679410
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|71761635|gb|DR959572.1|DR959572
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|211242314|gb|FL469535.1|FL469535
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|71317917|gb|DR795718.1|DR795718
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|211124519|gb|FL463077.1|FL463077
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|60356070|gb|DN223043.1|DN223043
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|4226377|gb|AI396484.1|AI396484
EST:     AAGGTCCTAAAGTAGATACTCCAACTCCTGAACAAATAAAAGCTATCAAG                         GCTGCTATTGCAAATG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATG
EST: gi|31364112|gb|CD448467.1|CD448467
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTTGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|71317919|gb|DR795719.1|DR795719
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|60397657|gb|DN230473.1|DN230473
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACT
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACT
EST: gi|5650116|gb|AI920476.1|AI920476
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTTGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
EST: gi|78117951|gb|DV536338.1|DV536338
EST:     AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAG                         GCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG
genomic: AAGGTCCTAAAGTAGTTGCTCCAACTCCTGAACAAATCACAGCTATCAAGgtacatgcat ... acgtttgtagGCTGCTATTGCAAATGCCCACACTCTCGAGGAAGCTGCAAGGCTAGAACAG