1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCTCTCTCTTGGTCATTGATAGAGGAAACCAAGCAATTCGAGAAATTCCACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAGgtacattgcacttaagctcgccgctaatattacttgaccatattttacttctgctctgtaaagacagtcatatggtcactgcattcagtgctcatgaaaagggacctgtaaaacatgaatattaattacttttgattttgaatgctcacag
species | Zea mays |
transcript | GRMZM2G020943_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAG GGTTTGCATTGCEST: gi|6021074|gb|AW066002.1|AW066002
genomic: ACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAGgtacattgca ... atgctcacagGGTTTGCATTGC
EST: ACTCAACGATGATGACTGGGCATATCAGTATGAAGCTGGTTTTCCACTAG GGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGGGATGCEST: gi|211452179|gb|FL052897.1|FL052897
genomic: ACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAGgtacattgca ... atgctcacagGGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGCGATGC
EST: ACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAG GGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGCGATGC
genomic: ACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAGgtacattgca ... atgctcacagGGTTTGCATTGCTTTGTGCTGCTGGCTTCTTTGGTTATATGCTTGCGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCTCTCTTGGTCATTGATAGAGGAAACCAAGCAATTCGAGAAATTCCACTCAACGATGATGACTGTGCATATCAGTATGAAGCTGGTTTTCCACTAGgtacattgcacttaagctcgccgctaatattacttgaccatattttacttctgctctgtaaagacagtcatatggtcactgcattcagtgctcatgaaaagggacctgtaaaacatgaatattaattacttttgattttgaatgctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG