Sequence
atgc intronic sequence ATGC exonic sequenceATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 5
ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
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GTATCGGACTTCCGTCTGGAAAGTCGCTTTTCCAACTCCAAGCTGAACGGATTTTGTGTGTTCAAAAGCTTGCTGCTCAATCAAgtgatagtaatgtcttttaacc-acaattttactctcttttttaatttcgt------ttcacatctttaccct--gaaatttgaaataacttgcag
upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 6
ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
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ATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca-tttgtcttggttcagtttctc----tcgcattatttggttagatcctca---tta------gtttatgtattgcag
upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G26240.1 (Glycine max), 5'ss of exon 5
ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
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ATATTGGACTTCCATCTGGAAAATCACTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCACAGAGACTAGCTGCTCAAGCTACAAATGAGAgtaagtttca-tttgtcttggttcagttttt--------cttgcattattcgg-tta-catcctcatca---gtttatgtattgcag
upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 5
ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCA---GTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
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ATATTGGACTTCCATCAGGAAAGTCACTCTTTCAACTTCAAGCTGAACGAATTTTGTGTGTTCAAAGACTTGCTGCTCAATCTACAAATGAGGgtaaggttattctgcattctgtttgtttgtatttcatttgacatgctgcccttattattttattacttgcag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148950927|gb|EC896559.2|EC896559EST: AGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAA GCCCGAGTAACACTGTGCTGATCCACTGGTATATAATGACAAGCCCCTTCA
genomic: AGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagttt ... taacttgcagGCCCGAGTAACACTGTGCTGATCCACTGGTATATAATGACAAGCCCCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATTGGACTTCCATCTGGAAAGTCACTTTTCCAACTCCAAGCTGAACGGATCTTGTGCGTTCAGAAGCTGGCTGCTCAATCCAGTGAAAgtaatagtttcaaacctgtcatcttctagttatttattacctcttcttctcttcagattatcacactcaaaaaatgttaataacttgcag
- - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT