Sequence
atgc intronic sequence ATGC exonic sequenceCTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaactattagaatgttctctttctttggtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaag--------agctcattctgatttactttttctaggatggataattaac-----tattagaatgttctc-----tttctttggtag---
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CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G03660.1 (Glycine max), 5'ss of exon 5
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaactattagaatgttctctttctttggtag-----
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CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgta-attgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttggctttttcttgtgtttgcttttgcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaacta-ttagaatgttctc----tttctttggtag
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CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgta-attgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag
upper sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaactattagaatgttctctttctttggtag----
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CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaatttctgtgta-aatattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361636|gb|CD445993.1|CD445993EST: GACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAG GATATTTGCTTTGGCAACTGTCCTAAGTTCGGTGCTTATCTACAACCTTCC
genomic: GACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggct ... tctttggtagGATATTTGCTTTGGCAACTGTCCTAAGTTCGGTGCTTATCTACAACCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaactattagaatgttctctttctttggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG