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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtttttggacttccaaactaacccttagagtccctcttacctgtattgtcaagatcaataaaatggaacaatgaaacacaactattgta...

Basic information

species Zea mays
transcript GRMZM2G019325_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52354.1 (Oryza sativa), 5'ss of exon 5
----------GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaa-------------tactctggtttttggacttccaaactaaccct------tagagtccctcttacct---gtattgtcaagatcaataaaatggaacaatgaaacacaactattgta------------------------
          |||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||             |||  | |||||||       | | | | | |       ||||   || |||  |     ||||||| | |||   |  | | || |||| |      |  || |                        
CACCTTGCAGGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtca-gttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g37780.1 (Oryza sativa), 5'ss of exon 5
----------GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaa-------------tactctggtttttggacttccaaactaaccct------tagagtccctcttacct---gtattgtcaagatcaataaaatggaacaatgaaacacaactattgta------------------------
          |||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||             |||  | |||||||       | | | | | |       ||||   || |||  |     ||||||| | |||   |  | | ||  ||| |      |  || |                        
CACCTTGCAGGTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtca-gttcacccagctagtactgtgagatttggttgctgaagtacaatttctgcattttcaacag

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g52361.1 (Oryza sativa), 5'ss of exon 5
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaa-------------tactctggtttttggacttccaaactaaccct------tagagtccctcttacct---gtattgtcaagatcaataaaatggaacaatgaaacacaactattgta------------------------
|||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||             |||  | |||||||       | | | | | |       ||||   || |||  |     ||||||| | |||   |  | | || |||| |      |  || |                        
GTATGAGAAGAGGCATTCCAACATTCCGGCTCACGTCTCCCCATGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAGTGCAGgtaaaacttaactcccataccttagtttttgactccttagaatcatcttaaataacagaggtgctattagttcaaacattgtca-gttcacccagctagtactatgagatttggttgctgaagtacaatttctgcattttcaacag

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G48930.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtttttggacttccaaactaacccttagagtccctcttacc-tgtatt-gtcaagatcaataaaatggaacaatgaaacacaactattgta
|||||| |||||||| || |||||||| |||||  |||| |||||||||||||| |||||||| |||||| ||||||||||||| ||||||| ||  |||| ||     || | |||| |  | |      | |   ||| | || ||| ||   ||||  |    | |   |||||   | || |   |  
GTATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGTTAAGGAAGGAGACCATATCATCATTGGCCAATGCAGgttatgatctgatt--caaacctacaaattgtctccattgattctgattatcgtgaatttgttttgatctttttgtttgt-taatgattgataatttcag--

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G23740.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtt--tttggacttccaaactaacccttagagtccctcttacctgtattgtcaagatcaataaaatggaacaatgaaacacaactattgta
 ||||| ||||| || |||||||| || || ||  |||| || || |||||||| |||||||| |||||||||||||||||||| ||||||| |   |  ||||   ||  || |    | | |  |    ||| ||    | |  | || | |   |   | |  |        |                
ATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCACCGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGgtgagtattaggttgtcttataccttttta-tgattcaggtagtgccggaaaacgat-ttctgattgtttgtgatttatgttgcag----------------

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv11s0118g00680.t01 (Vitis vinifera), 5'ss of exon 5
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtttttgg-acttccaaactaacccttagagtccctctt-acctgtattgtcaagatcaataaaatggaacaatgaaacacaactattgta------------------------
 ||||| ||||||||||| |||||||| |||||||  || ||||||||||||||||||||||| || ||||| || ||||||||||||||||||  ||    ||      || ||||   |  || |   |       || |  |  |  ||   || |  |    | |    |   |||| || | ||||                         
ATATGAGAAGAGGCACTCAAACATTCCTGCTCACACATCGCCATGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAGTGCAGgtaaatcttcaattgaaactacctccagtttgtccttccaataaaaagttgatttagagggtggtgaactctgtgtttg--ttactgaacataa-tgttgtttctttctatattttccttattcag

upper sequence: GRMZM2G019325_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g06220.t01 (Vitis vinifera), 5'ss of exon 5
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtttttggacttccaaactaacccttagagtccctcttacctgtattgtcaagatcaataaaatggaacaatgaaacacaactattgta
 ||||| ||||||||||| || || ||||| || || ||||||||||||||||| || || || || ||||| || |||||||||||||||| |   |   | ||||    ||            | ||       |       |  | ||  | |||| | | |   |   ||  || ||  ||  |  
ATATGAGAAGAGGCACTCAAATATACCAGCACATATATCCCCATGCTTCCGTGTCAAAGAGGGTGATCATGTTATTATTGGCCAGTGCAGgttagtttagagatttt---tttgtttttcttttttgaggaatttacaggtaaatggtttcttgttcaaaatatttacatcttgtcacccatttacag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557621|gb|CA829856.1|CA829856
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCCGTCAAAGTCATTCCAGCTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTC-GTCAAAGTCATTCCAGCTG
EST: gi|29545130|gb|CB605308.1|CB605308
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|21760219|gb|BQ635760.1|BQ635760
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAGGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30087837|gb|CB886043.1|CB886043
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211316810|gb|FL363635.1|FL363635
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211392169|gb|FL368055.1|FL368055
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|149105111|gb|EE290594.2|EE290594
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211362196|gb|FL333559.1|FL333559
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29544998|gb|CB605176.1|CB605176
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|71300930|gb|DR786493.1|DR786493
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28931312|gb|CB334673.1|CB334673
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29543508|gb|CB603890.1|CB603890
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|32164858|gb|CD670176.1|CD670176
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29544783|gb|CB605391.1|CB605391
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30087838|gb|CB886044.1|CB886044
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28931240|gb|CB334601.1|CB334601
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211091709|gb|FL353554.1|FL353554
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211331210|gb|FL345210.1|FL345210
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAA
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAA
EST: gi|31664381|gb|CD573106.1|CD573106
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29577019|gb|CB617131.1|CB617131
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211310292|gb|FL341193.1|FL341193
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|31664642|gb|CD573575.1|CD573575
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|31909700|gb|CD651051.1|CD651051
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|108953932|gb|EC364935.1|EC364935
EST:     ATGCTTCCGTGTGAAGGAAGGCGGACCATGTCCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAA
genomic: ATGCTTCCGTGTGAAGGAAGGCG-ACCATGTC-ATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAA
EST: gi|94480450|gb|EB709408.1|EB709408
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCCAGCT
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCC-TATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCC-AGCT
EST: gi|9566290|gb|BE475799.1|BE475799
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAGGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30088068|gb|CB886273.1|CB886273
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29167977|gb|CB411237.1|CB411237
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28187994|gb|CB179604.1|CB179604
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCAT-GGCCAGTGCAG                         GCCCCTATCAAA
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAA
EST: gi|30088049|gb|CB886254.1|CB886254
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAA-CTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTG
EST: gi|9255069|gb|BE345537.1|BE345537
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAGGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29130634|gb|CB381338.1|CB381338
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|32800936|gb|CD953172.1|CD953172
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29130364|gb|CB381068.1|CB381068
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29543646|gb|CB604026.1|CB604026
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|31664387|gb|CD573112.1|CD573112
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|193502900|gb|AM937550.1|AM937550
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28931218|gb|CB334579.1|CB334579
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30088067|gb|CB886272.1|CB886272
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211304600|gb|FL360889.1|FL360889
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTC
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTC
EST: gi|211448502|gb|FL309597.1|FL309597
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAAACTGTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAA-CTGTG
EST: gi|71300932|gb|DR786494.1|DR786494
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211325059|gb|FL357893.1|FL357893
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCGAAAACTGTGAGGTTCAATG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATG
EST: gi|71765310|gb|DR963247.1|DR963247
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GGCCCTATCAAAAACTGTGAGGTTCAATGGCGTCAAAGTCATTCCCAGCTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCC-AGCTG
EST: gi|28576053|gb|CB281945.1|CB281945
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30031970|gb|CB833821.1|CB833821
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGGTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29544607|gb|CB604987.1|CB604987
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|9461913|gb|BE453967.1|BE453967
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGAT-AAGGTCATTCCAGCTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCG-TCAAAGTCATTCCAGCTG
EST: gi|32165061|gb|CD670379.1|CD670379
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|91053268|gb|EB163686.1|EB163686
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28910286|gb|CB331363.1|CB331363
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|50338803|gb|CO533929.1|CO533929
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|166606562|gb|EG185528.1|EG185528
EST:     GCTTCCGTGTGAAGGAAGGCGACCATGTCTATCATTGGCCAGTGCAG                         GCCCCTATCAAAA
genomic: GCTTCCGTGTGAAGGAAGGCGACCATGTC-ATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAA
EST: gi|31664386|gb|CD573111.1|CD573111
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|14364918|gb|BG946729.1|BG946729
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|30306456|gb|CD001129.1|CD001129
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|89758418|gb|DY687604.1|DY687604
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|101393936|gb|EB818901.1|EB818901
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|28911154|gb|CB331797.1|CB331797
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGGAGGTTCAATGTCGTCAAAGTCATTCCAGCTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTG-AGGTTCAATGTCGTCAAAGTCATTCCAGCTG
EST: gi|30088050|gb|CB886255.1|CB886255
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|166646938|gb|EG307232.1|EG307232
EST:     CCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAAGTCATTCCAGCTGG
genomic: CCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211349793|gb|FL343923.1|FL343923
EST:     CCATGCTWCCGWGTGAAGGGAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTG
EST: gi|29946646|gb|CB816254.1|CB816254
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|211107962|gb|FL352613.1|FL352613
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAGGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|50324367|gb|CO519493.1|CO519493
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|31664382|gb|CD573107.1|CD573107
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|166553783|gb|EG167356.1|EG167356
EST:     TTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAAGTCATTCCAGCTGG
genomic: TTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|4804561|gb|AI665584.2|AI665584
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTTAAGGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|15554136|gb|BI644134.1|BI644134
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|19351853|gb|BM896385.1|BM896385
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCCAAAACTGTGAGGTTCAATGTCGT
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGT
EST: gi|30307088|gb|CD001761.1|CD001761
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
EST: gi|29577159|gb|CB617271.1|CB617271
EST:     CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAG                         GCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG
genomic: CCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 587

GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGGATCTGCTGCTGCCGGCAAGAAGGCTTTCACCGCAGCCTGAGTTTAAGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 438

GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGGATCTGCTGCTGCCGGCAAGAAGGCTTTCACCGCAGCCTGAGTTTAAGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 426

GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGGATCTGCTGCTGCCGGCAAGAAGGCTTTCACCGCAGCCTGAGTTTAAGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactct ... ctgtgaacagGCCCCTATCAAAAACTGTGAGGTTCAATGTCGTCAAAGTCATTCCAGCTGGATCTGCTGCTGCCGGCAAGAAGGCTTTCACCGCAGCCTGAGTTTAAGAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGAAAAGAGGCACTCCAACATTCCAGCTCACATCTCCCCATGCTTCCGTGTGAAGGAAGGCGACCATGTCATCATTGGCCAGTGCAGgtaatactctggtttttggacttccaaactaacccttagagtccctcttacctgtattgtcaagatcaataaaatggaacaatgaaacacaactattgta

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacacaa