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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGTATATACCTCAAGGTTCAAGTTACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgatataagtctcttgggtattgatggcctttctacctctatttctgtgtgcatacaattttggttgtatttttagtccaggtggaatgcttgat...

Basic information

species Zea mays
transcript GRMZM2G018946_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091533|gb|DV519907.1|DV519907
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|76915058|gb|DV165799.1|DV165799
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|71442030|gb|DR823080.1|DR823080
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|93013550|gb|EB639070.1|EB639070
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|71435524|gb|DR816574.1|DR816574
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|91876766|gb|EB406723.1|EB406723
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|78088916|gb|DV517309.1|DV517309
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|31558428|gb|CD527640.1|CD527640
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|71419272|gb|DR804704.1|DR804704
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
EST: gi|71446837|gb|DR827887.1|DR827887
EST:     ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCG                         GCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA
genomic: ACTCTCGTAGGGTTTCAAACTAAGCAGTATGGTTTTGCTCGCGCTATTCGgtaaatgata ... ttgtttacagGCCTGTTACCAATTTCAATGAAGTGGCGCTGCACTTCATTGAGTGTATTTA