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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagcaacgtccag

Basic information

species Zea mays
transcript GRMZM2G018447_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018447_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcaga--ctctaactagctaacaatgcatttgttgcagcaacgtccag
||||||||||||| |||||||||||||| ||||| ||||| ||| |||| || || ||||| || ||| | || || ||| | | ||||||| | |  ||   |   |   ||      |||  |||| |   |  | |   | |  || | ||  ||    || |||     ||  ||||||||||          
ATATTTTGTATGATTCGTGGTCTCCAGCCATGACGGTGAGTTCTATCTGCATTAGCATCCTCTCCATGCTCTCAAGCTCGACTGAAAAGgta-cttacagctcttacactcaccattaatatataaactttgatctctttgttgctgaagctgaaccttcgtctcgcttggcttgt-tttgttgcag----------

upper sequence: GRMZM2G018447_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgta---gcgtttagtcttactaactactcgat-ctattaaaacctcag-tgccctgactccataatcagactctaactagctaacaatgcatttgttgcagcaacgtccag
||||| |||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| | || ||||| || | ||||||     | |||  |||  |  |||      |  | | | ||  |||       |||| |    |    ||||| ||||  |   | ||  |   |  ||  | |      
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattg--tcgatgacaatatcag----

upper sequence: GRMZM2G018447_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S211_21V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttacta-acta--ctcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagcaacgtccag
||||| | |||||||| ||||| ||||| ||||||||||| ||| |||| ||||| |||||||| ||||||||||||||  | |  ||||||   ||||   || | | ||||  ||| |  |||| ||   |||||     |  |  | ||   |   ||       ||         ||  |              
ATATTCTTTATGACTCTTGGTCACCAGCAATGACCGTGAGTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtactttttaaagtttccacactagcctccacgtattgaattttcagtatatcgcatgtaaaaatggggactgttcttttagtgtcctgctttctaactt---------

upper sequence: GRMZM2G018447_T02 (Zea mays), 5'ss of exon 5
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcag-tgccctgactcca-taatcagactctaactagctaacaatgcatttgttgcagcaacgtccag
|||| ||||||||||| ||||| ||||| ||||| ||||||||  |||| ||||| ||||| |||||||| ||||||||  |||  |||||| | | |   | |   ||||  |  |    || || | |  | |       | | | |||  | |  |||   |  |||  |    | | ||      || ||   
ATATATTGTATGACTCTTGGTCACCAGCAATGACTGTGAGCTCCATCTGCATCAGCATCCTCTCTATGTTATCTAGTTCAACAGTGAAGgtatcctgttaacctg--aacttgttcacacgtttaatctttggatagaaaagcgcgagtaaagaaatacta--cacttaatgacat-tgttttatgttgacttc---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163588|gb|BM333427.1|BM333427
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|17929384|gb|BM266344.1|BM266344
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|89246821|gb|DY618608.1|DY618608
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         C
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccag-
EST: gi|60352940|gb|DN219913.1|DN219913
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         TGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... caacgtccagTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGG
EST: gi|18166490|gb|BM336329.1|BM336329
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|76288120|gb|DV027688.1|DV027688
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|18169036|gb|BM338876.1|BM338876
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c
EST: gi|76018970|gb|DT946140.1|DT946140
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGCAACGTCCAG                
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCG-C--C--AGCAA-----AGgtagcgttta ... c

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcagcaacgtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG