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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcag

Basic information

species Zea mays
transcript GRMZM2G018447_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018447_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT1G75440.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcaga--ctctaactagctaacaatgcatttgttgcag
||||||||||||| |||||||||||||| ||||| ||||| ||| |||| || || ||||| || ||| | || || ||| | | ||||||| | |  ||   |   |   ||      |||  |||| |   |  | |   | |  || | ||  ||    || |||     ||  ||||||||||
ATATTTTGTATGATTCGTGGTCTCCAGCCATGACGGTGAGTTCTATCTGCATTAGCATCCTCTCCATGCTCTCAAGCTCGACTGAAAAGgta-cttacagctcttacactcaccattaatatataaactttgatctctttgttgctgaagctgaaccttcgtctcgcttggcttgt-tttgttgcag

upper sequence: GRMZM2G018447_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgta---gcgtttagtcttactaactactcgat-ctattaaaacctcag-tgccctgactccataatcagactctaactagctaacaatgcatttgttgcag----
||||| |||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| | || ||||| || | ||||||     | |||  |||  |  |||      |  | | | ||  |||       |||| |    |    ||||| ||||  |   | ||    ||          
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag

upper sequence: GRMZM2G018447_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S211_21V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttacta-acta--ctcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcag-
||||| | |||||||| ||||| ||||| ||||||||||| ||| |||| ||||| |||||||| ||||||||||||||  | |  ||||||   ||||   || | | ||||  ||| |  |||| ||   |||||     |  |  | ||   |   ||       ||         ||  |     
ATATTCTTTATGACTCTTGGTCACCAGCAATGACCGTGAGTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtactttttaaagtttccacactagcctccacgtattgaattttcagtatatcgcatgtaaaaatggggactgttcttttagtgtcctgctttctaactt

upper sequence: GRMZM2G018447_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcag-tgccctgactcca-taatcagactcta-actagctaacaatgcatt-tgttgcag--
|||| ||||||||||| ||||| ||||| ||||| ||||||||  |||| ||||| ||||| |||||||| ||||||||  |||  |||||| | | |   | |   ||||  |  |    || || | |  | |       | | | |||  | |  ||| |||   | ||| ||  || |||||     
ATATATTGTATGACTCTTGGTCACCAGCAATGACTGTGAGCTCCATCTGCATCAGCATCCTCTCTATGTTATCTAGTTCAACAGTGAAGgtatcctgttaacctg--aacttgttcacacgtttaatctttggatagaaaagcgcgagtaaagaaatactacacttaatgacattgttttatgttgacttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32868298|gb|CF007980.1|CF007980
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211424415|gb|FL084950.1|FL084950
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTC
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTC
EST: gi|76018971|gb|DT946141.1|DT946141
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|18163874|gb|BM333713.1|BM333713
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421813|gb|FL084940.1|FL084940
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGNCTAGTTCGCCAGCAAAG                         CAACGTNCAGTGGGACAATGACCGCTATGTCAGGAACTGCCGC
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGG-ACAATGACCGCTATGTCAGGAACTGCCGC
EST: gi|32856121|gb|CD995802.1|CD995802
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421814|gb|FL084941.1|FL084941
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|89756005|gb|DY686208.1|DY686208
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421803|gb|FL084930.1|FL084930
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|29946440|gb|CB816151.1|CB816151
EST:     GTCTATGTTGTCTAGTTCGCCAGCAAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAG
genomic: GTCTATGTTGTCTAGTTCGCCAGC-AAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAG
EST: gi|67016859|gb|CO445608.1|CO445608
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|84976679|gb|DW475101.1|DW475101
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|18166490|gb|BM336329.1|BM336329
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|89246821|gb|DY618608.1|DY618608
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211424412|gb|FL084947.1|FL084947
EST:     GCTCTGTCTGTATCAGTAYCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421809|gb|FL084936.1|FL084936
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|116823841|gb|EC867418.1|EC867418
EST:     TATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTC---AACTGCCGNNCAACGGGA
genomic: TATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCG--CAACGGGA
EST: gi|16920438|gb|BM074657.1|BM074657
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|76288121|gb|DV027689.1|DV027689
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|60394784|gb|DN227654.1|DN227654
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|32935782|gb|CF040594.1|CF040594
EST:     GCTCTGTCTGTATCAGCATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|76018970|gb|DT946140.1|DT946140
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|18172273|gb|BM347661.1|BM347661
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211424418|gb|FL084953.1|FL084953
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|29947193|gb|CB816528.1|CB816528
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|17929384|gb|BM266344.1|BM266344
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|76288120|gb|DV027688.1|DV027688
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421806|gb|FL084933.1|FL084933
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211421802|gb|FL084929.1|FL084929
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGT
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGT
EST: gi|18163588|gb|BM333427.1|BM333427
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
EST: gi|211424411|gb|FL084946.1|FL084946
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAAC
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAAC
EST: gi|211421808|gb|FL084935.1|FL084935
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTG
EST: gi|18169036|gb|BM338876.1|BM338876
EST:     GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG                         CAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 208

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 402

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 421

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 425

ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgttta ... tttgttgcagCAACGTCCAGTGGACAATGACCGCTATGTCAGGAACTGCCGCAACGGGAGGTCGCCGAAGGAGACCAGATGGTGGTTCCATGACGACACGGTGTAATTGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtagcgtttagtcttactaactactcgatctattaaaacctcagtgccctgactccataatcagactctaactagctaacaatgcatttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG