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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg...

Basic information

species Zea mays
transcript GRMZM2G018177_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 5
CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg--------
|||||  | |||||||||||||||||||||||||| || ||| || ||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||  |  ||| ||| ||   ||   |    |||| | ||| |  |   | || || ||  ||  || |  ||| ||   ||||    | || |  | |         
CAGGGCTTGAAGGTCATTGCATGTGTTGGTGAGACTCTCGAGCAGCGGGAATCTGGTTCGACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTTCTGgtatctaacctctacttttggtctttt----tgac-tctgttgaattcct-tatccatttgtg--tactcgtttgatctaaatggtttgctgttcgcctatatgttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|13382324|gb|BG458999.1|BG458999
EST:     GGCTGGTTCAACCATGGATGCTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCA
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCA
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     GGCTGGTTCACCCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     ACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: ACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32908102|gb|CF012915.1|CF012915
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     ATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: ATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     CACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: CACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     GGCTGGTTCAACCATGGATGTTGTGGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     GCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|24765545|gb|CA400704.1|CA400704
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22819873|gb|BU499963.1|BU499963
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     TGGATGTTGTTGCTGCACAAACAAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: TGGATGTTGTTGCTGCACAAAC-AAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211534317|gb|FL091476.1|FL091476
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     GCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|9733498|gb|BE512130.1|BE512130
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTA                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 475

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 722

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 789

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 547

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA