Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg...

Basic information

species Zea mays
transcript GRMZM2G018177_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 5
CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg--------
|||||  | |||||||||||||||||||||||||| || ||| || ||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||  |  ||| ||| ||   ||   |    |||| | ||| |  |   | || || ||  ||  || |  ||| ||   ||||    | || |  | |         
CAGGGCTTGAAGGTCATTGCATGTGTTGGTGAGACTCTCGAGCAGCGGGAATCTGGTTCGACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTTCTGgtatctaacctctacttttggtctttt----tgac-tctgttgaattcct-tatccatttgtg--tactcgtttgatctaaatggtttgctgttcgcctatatgttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176083|gb|BM351165.1|BM351165
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22819721|gb|BU499811.1|BU499811
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTC
EST: gi|17931741|gb|BM268701.1|BM268701
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|101401985|gb|EB822612.1|EB822612
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211242056|gb|FL120941.1|FL120941
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|91056160|gb|EB166578.1|EB166578
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|13237189|gb|BG355203.1|BG355203
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAAC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAAC
EST: gi|5555350|gb|AI881301.1|AI881301
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18162555|gb|BM332394.1|BM332394
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32858447|gb|CD998128.1|CD998128
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211242069|gb|FL120954.1|FL120954
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22473439|gb|BU037919.1|BU037919
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|24766239|gb|CA401394.1|CA401394
EST:     GGCTGGTTCACCCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|33467983|gb|CF245032.1|CF245032
EST:     ACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: ACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18168315|gb|BM338155.1|BM338155
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32935495|gb|CF040307.1|CF040307
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|14202826|gb|BG836503.1|BG836503
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         ARAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATKAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211531697|gb|FL104787.1|FL104787
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAAGATCAAGGACTGGAGCAAACGTTGTTCTTG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAA-GATCAAGGACTGGAGCAA-CGTTGTTCTTG
EST: gi|21626066|gb|BQ620987.1|BQ620987
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|30087627|gb|CB885833.1|CB885833
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60352667|gb|DN219640.1|DN219640
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|33094781|gb|CF054775.1|CF054775
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|16925608|gb|BM078676.1|BM078676
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211239829|gb|FL120936.1|FL120936
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|14208462|gb|BG842140.1|BG842140
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18161941|gb|BM331780.1|BM331780
EST:     ATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: ATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32936738|gb|CF041557.1|CF041557
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAAC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAAC
EST: gi|18165365|gb|BM335204.1|BM335204
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|31358571|gb|CD442928.1|CD442928
EST:     GGCTGGTTCAACCATGGATGGTGTTGCTGCACAAACAAGAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTT
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTT
EST: gi|24765545|gb|CA400704.1|CA400704
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|33467888|gb|CF244937.1|CF244937
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32907755|gb|CF012568.1|CF012568
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTG
EST: gi|76012320|gb|DT939490.1|DT939490
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32933794|gb|CF038606.1|CF038606
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAAC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAAC
EST: gi|18173240|gb|BM348628.1|BM348628
EST:     CACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: CACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32936242|gb|CF041054.1|CF041054
EST:     GGCTGGTT-AACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAAC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAAC
EST: gi|5069936|gb|AI737901.1|AI737901
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|31358045|gb|CD442402.1|CD442402
EST:     GGCTGGTTCAACCATGGATGTTGTGGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|213175742|gb|FM182722.1|FM182722
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32919662|gb|CF024474.1|CF024474
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|89764158|gb|DY691067.1|DY691067
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18165667|gb|BM335506.1|BM335506
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|76013519|gb|DT940689.1|DT940689
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|67020562|gb|CO449311.1|CO449311
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|13198676|gb|BG354478.1|BG354478
EST:     GGCTGGTTCAACCATGGATGTTGCTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAG
EST: gi|18172926|gb|BM348314.1|BM348314
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|31405699|gb|CD484431.1|CD484431
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32908101|gb|CF012914.1|CF012914
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32935178|gb|CF039990.1|CF039990
EST:     GGCTGGTTCAACCATGGATGTTGGTGCTGCACAAACAAAGGCAATTGCTG                         AGAAGATCGAGGACTGGAGCAACGTT
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTT
EST: gi|91874218|gb|EB404175.1|EB404175
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|7227504|gb|AW566145.1|AW566145
EST:     GCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22473030|gb|BU037525.1|BU037525
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAAC
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAAC
EST: gi|61118536|gb|DN559497.1|DN559497
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|28982480|gb|BQ538137.2|BQ538137
EST:     TGGATGTTGTTGCTGCACAAACAAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: TGGATGTTGTTGCTGCACAAAC-AAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22819873|gb|BU499963.1|BU499963
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|9733498|gb|BE512130.1|BE512130
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60341170|gb|DN208143.1|DN208143
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|60397817|gb|DN230633.1|DN230633
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211534317|gb|FL091476.1|FL091476
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211522699|gb|FL104754.1|FL104754
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18174112|gb|BM349500.1|BM349500
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|28909959|gb|CB331185.1|CB331185
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|22545650|gb|BU098009.1|BU098009
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|13382324|gb|BG458999.1|BG458999
EST:     GGCTGGTTCAACCATGGATGCTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCA
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCA
EST: gi|211242058|gb|FL120943.1|FL120943
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|32907906|gb|CF012719.1|CF012719
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|211002461|gb|FL361134.1|FL361134
EST:     GCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|7227578|gb|AW566219.1|AW566219
EST:     GGCTGGTTCAACCATGGATGTTGNTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACT
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACT
EST: gi|78024857|gb|DV493244.1|DV493244
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|213182441|gb|FM190387.1|FM190387
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|17929542|gb|BM266502.1|BM266502
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|50335056|gb|CO530182.1|CO530182
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18169243|gb|BM339083.1|BM339083
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTA                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|86468468|gb|DY234838.1|DY234838
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18172280|gb|BM347668.1|BM347668
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18175195|gb|BM350583.1|BM350583
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|18169675|gb|BM339515.1|BM339515
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|76013518|gb|DT940688.1|DT940688
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGG
EST: gi|15499671|gb|BI596184.1|BI596184
EST:     GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTG                         AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCA
genomic: GGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcc ... tgttttacagAGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGGACTAAAGGTCATTGCATGTGTTGGTGAGACCCTTGAGGAGAGGGAGGCTGGTTCAACCATGGATGTTGTTGCTGCACAAACAAAAGCAATTGCTGgtacttttcctttacattccctccagtgacatgacatgtgtagtctctttctagcccttcatggttagttttttaatggtaatgaagagttgctgccttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA