Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttttagcagtttctttcaatgtactgaccttaaagccatgctgcag

Basic information

species Zea mays
transcript GRMZM2G017845_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 5
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactt-tttagcagtt-tctttcaatgtactgaccttaaagccatgct-gcag-----------------------
 ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||| || ||||| |||| |||||| |||||||||||||||||||||  ||||||||||| || ||||||| ||  |   || |       |    | |||||   ||                       
TGAGATTGGTCATGGGCGTTTCCTTAGTTGCATGGGAGCTGTTTGGCATCCAGAATGTTTTCGCTGTCATGCTTGTAATCAACCAATATATGACTATGAGgtaactcctttgtttacttattaagcagttatccatgtctgcaagagtaatgtttctatgcttatagtcaaccaatatatgactatgcag

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 4
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgt-ttactttttagcagtttctt-----tcaatgtactgac---cttaaagccatgctgcag--------------------------------------------------------------------------------------------
 |||||| | || ||  | ||| | ||||||||||||| |  ||||||||||||||| ||| |||||||||| || |  |  || ||   ||| |||||||| |   | |||| ||  ||  ||   | ||| |     ||||| |  | ||   ||| || |  |  |   |                                                                                            
TGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttgattgctacatgcttcatgaaactcaatattataacacgctttaaacattcttctggaatttataaatgaagatctttaacttcctttttcttaattttttgaggtcaatatgattgtatataatgctcaaatccatagtcattcacag

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 5
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgt-ttactttttagcagtttctt-----tcaatgtactgac-cttaaagccatgctgcag---------------------------------------------------------------------------------------------
 |||||||| || ||  | ||| | ||||||||||||| |  ||||||||| ||||||||| |||||||||| || |  |  || ||   ||| |||||||| |   | |||| ||  ||  ||   | ||| |     ||||| |  | || | |  |  ||| || | |                                                                                             
CGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGgttagagtcttgtgttggttgctacatgcttcatgaaactcaattttataacacgtttaaacattcttctggaatttatagatgaagatctttaactttctttaccttaattttttgaggtcaatacgaatgaaaataatgcttaaatccttattcatttacag

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 5
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttttagcagt-ttctttcaatgtactgaccttaaagc----catgctgcag-------------
 ||||| || || ||  | ||||| ||||||||||| |  ||||||||||| ||||||||  ||||| ||||||||  | | || ||    || ||||||||  || |    |||| |   ||  | | || | ||    |  |    || ||||    | || |  ||             
TGAGATAGGACATGGAAGGTTTCTGAGTTGCATGGGTGGCGTTTGGCATCCTGAATGTTTCTGTTGCAATGCATGTGATAAGCCCATCATAGATTATGAGgtccctatacattttattaagtattattattgtatcctcctgattcttttgaagcttaacctgttcaagctttgttttacag

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g11820.t01 (Vitis vinifera), 5'ss of exon 5
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttttagcagtttctttcaatgtactgaccttaa---agccatg-ctgcag----------------------------------
 ||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||||  | ||||| |  ||  |  | || || | ||| |||||||| |  |  |    |||| | ||   | | ||       |   |  ||||    |  | || ||||||                                  
TGAGATTGGTCATGGACGTTTTCTAAGTTGCATGGGTGCAGTTTGGCATCCAGAATGTTTCAGATGCCACGGTTGCGGCTACCCAATTTCTGATTATGAGgtgaaataataa--tactctatattggctgctgaagcactctagttcttagctgattcttgtctgcagttgctattatgctacttaaacagattgatataga

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 9
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttt-tagcagtttctttcaatgtactgaccttaaagccatgctgcag-----------------------------------------------------------------------------------
 || |||||||| |   |   | | ||  ||||||| |||||||||||||| |||||||||||||| ||||| ||| |||  |  || | |||   ||||||     |   ||| |  ||| |   |||||   ||     | || |  ||| |  |||||                                                                                       
TGAAATTGGTCATGAAAGACATTTGAGGCGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGTCATGCTTGTGGTCTTCGCATTTTTGATCTTGAGgtccaaatccagttcagatttattctagttttggtctg-acattggc--taatgaaatgcttggatactaagctgattttcaactaattttggtggttctatggaatgcacttgcttattttcatttttttccccctttgtttggtag

upper sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 6
AGAGATTGGTCACGGGCGTTTTCTCAGTTGCATGGGAGCTGTTTGGCATCCGGAATGTTTTCGTTGCCATGCATGTAGTCAACCTATATATGACTATGAGgtaacttttttgtttactttt-tagcagtttctttcaatgtactgaccttaaagccatgctgcag-------------------------------------------------------------------------------
 ||||||||||| ||  | | | | ||||||||||| |||||||||||||| |||||||||||||||| ||| ||| | |  || || | |||  |||||||     |   ||| |  ||| |   |||||   ||   | | || |  ||| |  |||||                                                                                   
CGAGATTGGTCATGGAAGATATTTGAGTTGCATGGGTGCTGTTTGGCATCCAGAATGTTTTCGTTGCCGTGCTTGTGGGCTTCCCATTTTTGAACATGAGgtccaaatccagttcagatttattctagttttggtctg-gcattggc--taatgaaatgcttggatccaaagctgattttccagtaattttggtggttctatggaatgcacttgctaattttcattttttcctttctttgatag