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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGTTCTATATGATATGTTGCAAAAGGAGGTCATTTCTCTAAGGAAGGCGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggactagccttgagactggctcgctgtcctcttcatttgtctattgcttcctcgtaatgaagtgatgtgctgtacag

Basic information

species Zea mays
transcript GRMZM2G017525_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017525_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g44340.1 (Oryza sativa), 5'ss of exon 9
AGGTGTTCTATATGATATGTTGCAAAAGGAGGTCATTTCTCTAAGGAAGGCGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggactagccttgagactggctcgctgtcctcttcatttgtctattgcttcctcgtaatga--agtgatgtgctgtacag
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AGGTTTGCTGTATGATACGCTGCAAAAGGAGGTAATTGCTCTAAGGAAGGCTTGCCATGAAAAGGACCAAAGCCTGAAAGACAAGGACGATGCAGTTGAGgtaaat-ctagt-tggagagtgttgaattgtttttaacctttcattttgccttggtcctattaatgggtggtttgatgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046320|gb|BF728459.1|BF728459
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|60396927|gb|DN229746.1|DN229746
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|37393909|gb|CF634221.1|CF634221
EST:     CGTGCCACGAAAAGGATCAGAACCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|211146570|gb|FL325019.1|FL325019
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|60347061|gb|DN214034.1|DN214034
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|9953958|gb|BE640541.1|BE640541
EST:     CGTGCCACGAAAAGGATCAGAGTCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|78179137|gb|DV549510.1|DV549510
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|76930458|gb|DV172393.1|DV172393
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
EST: gi|6918473|gb|AW400003.1|AW400003
EST:     CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAG                         ATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC
genomic: CGTGCCACGAAAAGGATCAGAGCCTGAAAGACAAGGACGACGCAGTTGAGgtaaggacta ... tgctgtacagATGTTGGCAAAGAAAGTAGATACTTTGACAAAAGCTATGGAGTCAGATGCC