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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTATCTGATTGTTTCTGCTGTCACCAATCTTTTGGTTAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAGgtacgggaagcaacttatatcctgttgcttctggtgcaaatggagatttgtacttgtttccctgcaagggttgtaaattaaacagaattatgattggcag

Basic information

species Zea mays
transcript GRMZM2G017365_T08
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017365_T08 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g58580.1 (Oryza sativa), 5'ss of exon 4
GCATTATCTGATTGTTTCTGCTGTCACCAATCTTTTGGTTAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAGgtacggga---agcaacttatatcctgttgcttctggtgcaaatggagatttgtacttgtttccc-tgcaagggttgtaaattaaacagaatt-atgattggcag--------------
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |      || | |  ||     ||  | ||| || || |||    | | ||| | | |    |  |||  |   ||   |||||  ||| || | | |  |              
GCATTATCTCATTGTTTCTGCTGTCACAAACCTTTTGGTTAATTTACTTGGTGTTTGGTTCTTTCGGAGCTATGCTCGTGTTAACATAGgtaagtactccagtatccaatccagagtcacctcttgtacagatgccagtgtatacatatctaaaatctaagtttcacaatcgaaacatcattgatcaattgttgtctattaatgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76014355|gb|DT941525.1|DT941525
EST:     TAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAG                         TTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGT
genomic: TAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAGgtacgggaag ... tgattggcagTTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGT
EST: gi|71442151|gb|DR823201.1|DR823201
EST:     TAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAG                         TTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGT
genomic: TAATTTACTTGGTGTTTGGTTCTTCCGGAACTACGCTCGTGTTAACATAGgtacgggaag ... tgattggcagTTTACAGGAATGCAGAGGATATGAATTACCACTCGGTCTGTTTGCATGTGT