1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGGATCAGGGAATACAAGAGATTCAGCACCAAATCACTGAAGTAAATGAAATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcctttctgaaaaattggatctacattttgaaatttcctacgccacatggattatttttacggcacatgattggatgggattggaaaatttta...
species | Zea mays |
transcript | GRMZM2G017329_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|18176906|gb|BM378116.1|BM378116
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|78119338|gb|DV537722.1|DV537722
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGGTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|84980293|gb|DW530642.1|DW530642
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: GATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|78075157|gb|DV503591.1|DV503591
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|37380903|gb|CF627296.1|CF627296
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|6448408|gb|AW181174.1|AW181174
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: TGTGCTAGTCCATGACCAAGGAGCAATGATAG ATGCCATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|32868289|gb|CF007971.1|CF007971
genomic: TGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGACCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|15199008|gb|BI423606.1|BI423606
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGACCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|71760533|gb|DR958470.1|DR958470
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|67026173|gb|CO454922.1|CO454922
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|78083868|gb|DV512261.1|DV512261
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|71758925|gb|DR956862.1|DR956862
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|116820906|gb|EC864174.1|EC864174
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: GAGC-ATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|16925613|gb|BM078681.1|BM078681
genomic: GAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|32941316|gb|CF046135.1|CF046135
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGACCAAGGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTAEST: gi|211265555|gb|FL463513.1|FL463513
genomic: AATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
EST: GGAGCAATGATAG ATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
genomic: GGAGCAATGATAGgtgtgtggcc ... tgtgaaccagATGACATTGATTCCCATATAGAGAACGCCGTTGTAGCGACTTCGCAGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGATCAGGGAATACAAGAGATTCAGCACCAAATCACTGAAGTAAATGAAATCTTCAAAGATCTCGCTGTGCTAGTCCATGATCAAGGAGCAATGATAGgtgtgtggcctttctgaaaaattggatctacattttgaaatttcctacgccacatggattatttttacggcacatgattggatgggattggaaaatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctacgcc