1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaaccactgtgagataatgagctattcaaacatttcaagcaaaaattattgtatgtgctgtttttcgtatcactgctctgtaactgtaagtgaa...
species | Zea mays |
transcript | GRMZM2G017254_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTG-A-A- CAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAEST: gi|91053863|gb|EB164281.1|EB164281
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aaaaatctagCAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTA
EST: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAG CAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAEST: gi|211384728|gb|FL390642.1|FL390642
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aaaaatctagCAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTA
EST: CATGATTTTGCAAGCTTGCGACATGCAGTTCTTG-A-A- CAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAEST: gi|60350389|gb|DN217362.1|DN217362
genomic: CATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aaaaatctagCAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTA
EST: AGGATGAAGTTCATGATTTTGCAAGCTTGCGACATGCAGTTCTTGAACAG --G-ATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTA
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aaaaatctagCAGGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaaccactgtgagataatgagctattcaaacatttcaagcaaaaattattgtatgtgctgtttttcgtatcactgctctgtaactgtaagtgaa
- - - - - - - - - - AGGATG