1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaaccactgtgagataatgagctattcaaacatttcaagcaaaaattattgtatgtgctgtttttcgtatcactgctctgtaactgtaagtgaa...
species | Zea mays |
transcript | GRMZM2G017254_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGCAGEST: gi|60350389|gb|DN217362.1|DN217362
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTG-A-A-CAGgtagatgaac ... aatctagc
EST: AGGATGAAGTTCATGATTTTGCAAGCTTGCGACATGCAGTTCTTGAACAG GATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACAEST: gi|211384728|gb|FL390642.1|FL390642
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aatctagcagGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACA
EST: CATGATTTTGCAAGCTTGCGACATGCAGTTCTTGAACAG GATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACAEST: gi|149108501|gb|EE189684.2|EE189684
genomic: CATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aatctagcagGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACA
EST: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAG GATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACA
genomic: AGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaac ... aatctagcagGATAGACAGGCTTTTCTGATGGGAAACAACCCTTTAGCAAAGGATCTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACACATATTTGGAATCAAAGGATGAAGTTCATGATTTTGCAAGCCTGCGACATGCAGTTCTTGAACAGgtagatgaaccactgtgagataatgagctattcaaacatttcaagcaaaaattattgtatgtgctgtttttcgtatcactgctctgtaactgtaagtgaa
- - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaaa