1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGGGACTGGGGTATGTTCATTGACTCCTGCTTTATACACTGTCAGTCAATGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacatatctacgttatgtttgtcacagatgtagatggacatggtttaactggctattcaaatttgtgcacgcactgtggctgttctaattttaca...
species | Zea mays |
transcript | GRMZM2G016561_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|32933577|gb|CF038389.1|CF038389
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAGGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCTGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|78112623|gb|DV531017.1|DV531017
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|71771147|gb|DR969084.1|DR969084
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|94474604|gb|EB703562.1|EB703562
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|93012697|gb|EB638217.1|EB638217
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|71306020|gb|DR789141.1|DR789141
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|71426622|gb|DR807672.1|DR807672
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAGEST: gi|91873260|gb|EB403217.1|EB403217
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
EST: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAG ACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
genomic: TGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacat ... tgtgatgcagACGGCCGCAGAAGCGGTGGGAGATTGGTTCTTTGAGCGGAGGGAGGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGACTGGGGTATGTTCATTGACTCCTGCTTTATACACTGTCAGTCAATGAAAGCTTTGGCTTGGCATTCGCCATCAGCTGCTAGAGTGAACAACAAGgtaaacacatatctacgttatgtttgtcacagatgtagatggacatggtttaactggctattcaaatttgtgcacgcactgtggctgttctaattttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT