Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagatcttcattcctaatgcatttattctgttttacaaatttatagtcaactgtaaaggtatttgcctctttgtgccgtctgacacttaactacag

Basic information

species Zea mays
transcript GRMZM2G016184_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G016184_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 8
GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagatcttcattcctaatgcatttat------tctgttttacaaatttatagtcaactgtaaaggtatttgcc-tctttgtgccgtctgacacttaactacag------------------
|| ||||||||| || ||||||| || ||||| || |||||||||||||| ||| |||||||| ||| || | |||| || ||||||||||      | | || ||     || |  | |  |||| |  ||       ||| | |||  ||| |||| |   ||| |                  
GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGgtaataacatatccattgctgatgcatttatggactctttattctattttattgtgtttatatgtacaaatacacataatctctatgctatctaacacattcttactgttctatcttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12972723|gb|BG268124.1|BG268124
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|166415244|gb|EG271140.1|EG271140
EST:     ATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: ATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|6466756|gb|AW191416.1|AW191416
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|71760532|gb|DR958469.1|DR958469
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|50338097|gb|CO533223.1|CO533223
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTCCCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|6827703|gb|AW331346.1|AW331346
EST:     TTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|6526808|gb|AW216077.1|AW216077
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|50322745|gb|CO517871.1|CO517871
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|211033261|gb|FL440337.1|FL440337
EST:     TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: TATTTTTGTTCATGTATGTATTTTACCACATCTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
EST: gi|12972667|gb|BG268096.1|BG268096
EST:     ATTTTTGTTCATGTATGTATTTTACCACATGCTATTTGCATTACGGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA
genomic: ATTTTTGTTCATGTATGTATTTTACCACAT-CTATTTGCATTACGGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACATTTGTTGTGCCATCA