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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttgtgccccctgttttactttttagcaaatactattggtgtctatttcatctacttttactgtcctttgtggtaagttgaaattaacagtgta...

Basic information

species Zea mays
transcript GRMZM2G015642_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015642_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 4
GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttgtgccccctgttttactttttagcaaatactattggtgtctatttcatct--acttttactgtcctttgtggtaagttgaaattaacagtgta
||||||| ||||| |||||||||||||||||| |||| |||||  | || | | ||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||   || |     |  |  || |||| ||| |    |||||| ||||| | ||  | ||  | |     |  |  |    ||| ||||  ||||| 
GGCTCAAACCCAAACTTGATGAAGTCCTGCCTCAAGCAGCTGGAATAGTTTATGTTGTTGATGCTCAAGATTTCTTGTCTACCATGCATGCTGCTGCAGAgtaatttcgctgacttacatcctg-ttcttagtaaaaatatgtggtgtttattttagcttaaattgaaatccatctcttactggaatgagattagaagtgt-

upper sequence: GRMZM2G015642_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g27870.1 (Oryza sativa), 5'ss of exon 3
GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattt-----tgtgccccctgttttactttttagcaaatactattggtgtctatttcatctactttta-ctgt--cctttgtggtaagttgaaattaacagtgta
||||||| |||||||||||||||||||||||| |||| |||||| | || |||  |||||||||||| ||||||||||| | ||||||||  | |||||||||| |||      ||   || |||| |   |   |   | |  || |||||| |||||     |  || | ||     ||   |       || | | ||       
GGCTCAAACCCAAGCTTGATGAAGTCCTGCCTCAAGCAGCTGGGATAGTTTTTGCTGTTGATGCTCAAGATTTCTTGTCCACCATGCAAGTCGTTGCAGAgtaattttgctgacgtaatccatgttattactaaaaatgagtg-tagtggtgtttatttagctaaaattgaactacagtctacatctcttactggattgaa-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74245854|gb|DT653768.1|DT653768
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71428602|gb|DR809652.1|DR809652
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71764914|gb|DR962851.1|DR962851
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|50331664|gb|CO526790.1|CO526790
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|5006033|gb|AI712095.1|AI712095
EST:     ATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: ATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|149082784|gb|EE172006.2|EE172006
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTTTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71312732|gb|DR792898.1|DR792898
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71428601|gb|DR809651.1|DR809651
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|32864563|gb|CF004245.1|CF004245
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|76911904|gb|DV164485.1|DV164485
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|4827441|gb|AI668133.1|AI668133
EST:     GCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: GCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|211371450|gb|FL285907.1|FL285907
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|91054430|gb|EB164848.1|EB164848
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|50331665|gb|CO526791.1|CO526791
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|94476999|gb|EB705957.1|EB705957
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71757402|gb|DR955339.1|DR955339
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|76013858|gb|DT941028.1|DT941028
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|86467969|gb|DY234339.1|DY234339
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTTTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|74245853|gb|DT653767.1|DT653767
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|91054431|gb|EB164849.1|EB164849
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|31354626|gb|CD438983.1|CD438983
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|78111328|gb|DV529725.1|DV529725
EST:     TTTATTGTTGATGCTCAGGATTTTTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71757403|gb|DR955340.1|DR955340
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71313717|gb|DR793448.1|DR793448
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGGNAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71764913|gb|DR962850.1|DR962850
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|74245303|gb|DT653217.1|DT653217
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|78076004|gb|DV504438.1|DV504438
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|149082785|gb|EE172007.2|EE172007
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|78111329|gb|DV529726.1|DV529726
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAGGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|31355278|gb|CD439635.1|CD439635
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71312730|gb|DR792897.1|DR792897
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|60354603|gb|DN221576.1|DN221576
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|76287924|gb|DV027492.1|DV027492
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|78025960|gb|DV494347.1|DV494347
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71437117|gb|DR818167.1|DR818167
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|101381890|gb|EB813002.1|EB813002
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|16922835|gb|BM075827.1|BM075827
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
EST: gi|71313715|gb|DR793447.1|DR793447
EST:     TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGA                         GTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC
genomic: TTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 40 (downstream exon)
Score: 115

GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAG


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 88

GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAG


Block sizes: 47 (upstream exon), 43 (downstream exon)
Score: 57

GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 105

GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttg ... ccttttgcagGTACCTTTATGACATTCTGACAAAAGCATCTGTAGTTAAGAAAAGGATCCCTGTGCTTATATTCTGCAACAAGACGGATAAAGTTACCGCCCACTCGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTCAAGCCCAAGCTTGATGAAGTCCTGCCTAAAGCTGCTGGGGTTGTCTTTATTGTTGATGCTCAGGATTTCTTGTCTAGCATGCAAGCTGCTGCAGAgtaaattttgtgccccctgttttactttttagcaaatactattggtgtctatttcatctacttttactgtcctttgtggtaagttgaaattaacagtgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccccc