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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATCTGCTTGACTCAAATGCAAGTTTTGCTCAAATGTGGCAAAAATAATTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttatttgatagatgcaaaatctagcataattctatcattttatacacatctatatgacctttgtgatatgtcacaatatgaggtgttcaaatgtgtctaactactaaattattgtcttctcctatttgttttacag

Basic information

species Zea mays
transcript GRMZM2G014367_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934225|gb|CF039037.1|CF039037
EST:     TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
EST: gi|12970345|gb|BG266937.1|BG266937
EST:     TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCAC
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCAC
EST: gi|211038615|gb|FL457701.1|FL457701
EST:     TTGTCTCMCCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAG                         GAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT
genomic: TTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttat ... tgttttacagGAAAAGATGGAATGTAACTCAAATTTTGGTGGCCGCACAAGTGTGGAGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAATCTGCTTGACTCAAATGCAAGTTTTGCTCAAATGTGGCAAAAATAATTGTCTCACCAATTGTCAGCGCGCCTGTTTCCAGCAAAGTTTCAGAGAAGgtaagtttatttgatagatgcaaaatctagcataattctatcattttatacacatctatatgacctttgtgatatgtcacaatatgaggtgttcaaatgtgtctaactactaaattattgtcttctcctatttgttttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG