Sequence
atgc intronic sequence ATGC exonic sequenceATTGCGATGAAGGAGCTTAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAGgtgagtattttctaatgaaaagccctcacttatttttatgaacaattttactatattttcattgttaattacttcgttgataaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G013600_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT5G51940.1 (Arabidopsis thaliana), 5'ss of exon 5
ATTGCGATGAAGGAGCTTAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAGgtgagtattttctaatgaaaagccctcacttatttttatgaacaattttactatattttcattgttaattacttc--gttgat-aaacag
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ATTGCGATGAAGGAGCTTAGGCAGCGGAAGATACCATTCACTATTAGACGCTATCTACCTGATGGGAGgtgag-agattgcattga---gcttatattattctcttcactcacttgatctcttcttttcttgtgacttacttatgattcctgaaacag
upper sequence: GRMZM2G013600_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv16s0100g00530.t01 (Vitis vinifera), 5'ss of exon 7
ATTGCGATGAAGGAGCTTAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAGgtgagtat------tttctaatgaaaagccctcacttatttttatgaacaattttactatattttcattgttaattacttcgttgataaacag---------------
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ATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGCCGCTACCTGCCTGATGGAAGgtaacaataacattcttattttgaaaagttactattg--tcttattgttgcttctgtttggttctcgtt-ttctttacattaatcattggttgtgggggtttttccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60400710|gb|DN233517.1|DN233517EST: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAG TTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
genomic: AGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAGgtgagtattt ... tgataaacagTTATGAAGACTGGGGAGTAGACGAGCTCATTGTGGAGGACTCCTGGAAACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGCGATGAAGGAGCTTAGAGCGCGCAAGATACCCTTCACGATCAGACGGTACCTACCTGATGGAAGgtgagtattttctaatgaaaagccctcacttatttttatgaacaattttactatattttcattgttaattacttcgttgataaacag
- - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG