1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAAGCTGAAAGTTCTAAAGGATATAGCAAAAGAGCATCAGATTGATTGGGATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgctactaaacctctcttgtgcatacttttaccttacgtgccttgtcttgagtaatacgtttgatttctttgtag
species | Zea mays |
transcript | GRMZM2G012413_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGGCCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATTEST: gi|149076185|gb|EE164779.2|EE164779
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATT
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGGGCAAGTACATTTCTEST: gi|211369839|gb|FL433659.1|FL433659
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTCT
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGACCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATTEST: gi|148945139|gb|EC890337.2|EC890337
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATT
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGGCCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATTEST: gi|71322908|gb|DR798137.1|DR798137
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTCTTGAAGCTTCCAACATGCCTGTTAAGAATATT
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGGCCAAGTACATTTCCTTGA-GCTTCCAACATGCCTGTTANGAATATEST: gi|71767968|gb|DR965905.1|DR965905
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTC-TTGAAGCTTCCAACATGCCTGTTAAGAATAT
EST: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATT AAAGGGCCAAGTACATTTCT
genomic: ATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgcta ... ttctttgtagAAAGGGCCAAGTACATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCTGAAAGTTCTAAAGGATATAGCAAAAGAGCATCAGATTGATTGGGATACCGCTGAGAGTGAGCAGGAGCTTCTGAAACCTCCTGAAGAGTTGATTgtatgcgctactaaacctctcttgtgcatacttttaccttacgtgccttgtcttgagtaatacgtttgatttctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA