1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGAAGCAAATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaatgtctcttttctatacttggtttcttcatgctttccttctgttcgcctgctttttagtttaaattgaaattattcacttgcatgattgtg...
species | Zea mays |
transcript | GRMZM2G011912_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCAAATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTG GTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTEST: gi|160481668|gb|EY254238.1|EY254238
genomic: AGCAAATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaa ... gtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCT
EST: GGTTGCGTTCTTGTTAAAGCGGACACTG GTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCTEST: gi|19058631|gb|BM737298.1|BM737298
genomic: GGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaa ... gtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCT
EST: CAAATAAGAACTGCACTTGCGGTTGCGTCCTTGNTAAAGCGGACACTG GTAATGCCTCCATTATGGNGCAGGCTTGATAGAATGTGGTTTGGACATCCTEST: gi|166584196|gb|EG084706.1|EG084706
genomic: CAAATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaa ... gtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGATAGAATGTGGTTTGGACATCCT
EST: ATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTG GTAATGCCTCCATTATGGTGCAGGCTTGA
genomic: ATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaa ... gtacttttagGTAATGCCTCCATTATGGTGCAGGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGCAAATAAGAACTGCACTTGCGGTTGCGTCCTTGTTAAAGCGGACACTGgtaggtgaaatgtctcttttctatacttggtttcttcatgctttccttctgttcgcctgctttttagtttaaattgaaattattcacttgcatgattgtg
- - - - - AAGAAC