1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTGTTTCAGGTTACCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgccgccctgtgtctatgcttacgtcaatcacacagacctattgttctaaaccctggataacaattctaaaatcccacttaatttgggtatcag...
species | Zea mays |
transcript | GRMZM2G011893_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA CGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|19057799|gb|BM736466.1|BM736466
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA CGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|78122303|gb|DV540687.1|DV540687
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|8383251|gb|BE056194.1|BE056194
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|71446780|gb|DR827830.1|DR827830
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGATEST: gi|149102642|gb|EE287999.2|EE287999
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
EST: CCTGGTTGAAGAACGACGGGTTTATATATGAACGGCATAACTTCTCCCAA TGCACCGAGTTTTACCEST: gi|78122304|gb|DV540688.1|DV540688
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCAC-GAGTTTTACC
EST: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGTATAACTTCTCCAAA TGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
genomic: CCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgcc ... gaatatgcagTGCACGAGTTTTACCCATAAAATGCGAGATGGTTGGGGTCTGGCGACTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTTCAGGTTACCTGGTTGAAGAACGACGGGTTTATATATGACCGGCATAACTTCTCCAAAgtatgctgccgccctgtgtctatgcttacgtcaatcacacagacctattgttctaaaccctggataacaattctaaaatcccacttaatttgggtatcag
- - - - - - - - - TTGAAG
- - - - - - - - - - TGAAGA
- - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccct