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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtcatacctgcccataccagtacttttgcaactatttaattattcttaatctataatgcaatagctttggtattcaaaaagatgcattcttttaccag

Basic information

species Zea mays
transcript GRMZM2G011456_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011456_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g04660.1 (Oryza sativa), 5'ss of exon 5
CTACAGAGTGAAATAGCAGACTCATGGGAATTATGGAATTCATTCAGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtcatacctgc----ccatacca-gtactt--ttgcaactat-----ttaattattcttaatctataatgcaatagctttggtattca----aaaagatg--cattcttttaccag
      ||||| |  | |||||| |||||||  ||||||||||| ||| |  ||||||| ||||| || ||||| || ||||| |||||| ||| |||||||   | | |||        |||| || |||  || ||| |       | | | ||  | ||||||| |||  |||| |||||| ||||    ||| | ||   ||||  ||| |||
------AGTGATACCGTAGACTCTTGGGAATGGTGGAATTCATTTAGACTATTATGTGAGCATAGCAGTCAACTGTGTGTGGCGCTTGATGTTTTgtaagtgatgttcttgcattgttgcaccaagtgctttcttccaagtgaagatgtcactgataataaatctatcatgttatagttttggttttcattacaaaggttggctattcacttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354427|gb|CD438784.1|CD438784
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCC
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCC
EST: gi|91876145|gb|EB406102.1|EB406102
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAAC
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAAC
EST: gi|71311078|gb|DR791853.1|DR791853
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: gi|71300983|gb|DR786520.1|DR786520
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: gi|211230912|gb|FL222481.1|FL222481
EST:     AGAT-GCTATGTGACCATAGTAGCCCACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATTTAAGGCGCTGGTTTGGGGAGCCTG
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATT-AGGGCGCTGGTTTGGGGAGCCTG
EST: gi|78117239|gb|DV535626.1|DV535626
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATTANGGCGCTGGTTTGGGGAGCCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: gi|74233408|gb|DT641322.1|DT641322
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATTAGGGCGCTGGTTTGGGGAGCCTGT
EST: gi|89762829|gb|DY690269.1|DY690269
EST:     AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTC                         GGGCACACTGCCATCAATGAACTCATT
genomic: AGATTGCTATGTGACCATAGTAGCCAACTATGCGTGGCACTTGATATTTCgtaagtgtca ... cttttaccagGGGCACACTGCCATCAATGAACTCATT