1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGTTCAACCACACAATAATTGACCAGCAATTTGAGTTTTATCAAGCGGATGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctgttacctgctagtattaatactactttactgagttctattgacctaacaattcaaactttctacag
species | Zea mays |
transcript | GRMZM2G011404_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCT ATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACTEST: gi|211160450|gb|FL446939.1|FL446939
genomic: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
EST: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCT ATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACTEST: gi|32804682|gb|CD956918.1|CD956918
genomic: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
EST: GATCCCAGCAGGCTTCTACCAAGCT ATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCAATGTCCAACTEST: gi|67013916|gb|CO442665.1|CO442665
genomic: GATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
EST: TGGACTGACATG-TTCAACCCATCGGATCC-ANCATGCTTCTACCAAGCT ATGTCCCTGAAGGCTCCTTTNATCGCA-GAGAGCACACACCGATGTCCAACEST: gi|32804547|gb|CD956783.1|CD956783
genomic: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTT-ATCGCAAGAGAGCACACACCGATGTCCAAC
EST: GATCCCAGCAGGCTTCTACCAAGCT ATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACTEST: gi|40334682|gb|CK368752.1|CK368752
genomic: GATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
EST: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCT ATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
genomic: TGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctg ... ctttctacagATGTCCCTGAAGGCTCTTTTATCGCAAGAGAGCACACACCGATGTCCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTCAACCACACAATAATTGACCAGCAATTTGAGTTTTATCAAGCGGATGGACTGACAAGGTTCAACCCATCGGATCCCAGCAGGCTTCTACCAAGCTgtatgctctgttacctgctagtattaatactactttactgagttctattgacctaacaattcaaactttctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT