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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAGTGGCACTGCGATGTGTAGACCCAGATGCTGAGAAAAGGCCCACTATGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgtacatcttgagctttgttccgtcgataccgtaattccttgttctaaatcttgtgctgtgtgatcctctgaag

Basic information

species Zea mays
transcript GRMZM2G010953_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010953_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 7
TCTAGTGGCACTGCGATGTGTAGACCCAGATGCTGAGAAAAGGCCCACTATGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgt--ttgttgtacatcttgagctttgtt--ccgtcgataccgtaattccttgttctaaatcttgtgctgt----gtgatcct-ctgaag
 |||||||||||| | || || ||||||||  |||||||||| || ||||||||||| |||||||||||||||||||||||||| || || || || |||||  |     |   || |   ||    |  |  ||   |   ||  || |||   |||||||   ||| |    || ||||| ||||||
CCTAGTGGCACTGAGGTGCGTCGACCCAGACTCTGAGAAAAGACCTACTATGGGTCATGTTGTTCGGATGCTCGAGGCAGAAGATGTCCCATCCCGTGAGgtggtaacgctttctcctttcctgcaataacattcatcatattatatcattgcaataaatctgaagcttttgctgtaatcctactgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149070090|gb|EE158490.2|EE158490
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|89755645|gb|DY685992.1|DY685992
EST:     TGGGTCAGGTTGTTTGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|83279064|gb|DV943072.1|DV943072
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|60354736|gb|DN221709.1|DN221709
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|113607860|gb|DW778049.1|DW778049
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|88749325|gb|DY533466.1|DY533466
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|148994591|gb|EE034155.2|EE034155
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|18384770|gb|BM417969.1|BM417969
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAG
EST: gi|149079749|gb|EE168749.2|EE168749
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|88752191|gb|DY536332.1|DY536332
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGC-ACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|148995005|gb|EE034340.2|EE034340
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|78121330|gb|DV539714.1|DV539714
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|91871890|gb|EB401847.1|EB401847
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|89759882|gb|DY688555.1|DY688555
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|149107202|gb|EE189088.2|EE189088
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTCCCTTCACGGGAG                         GACCGCCGGACCCGGAGAGGCCACAGCACCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|76932839|gb|DV173197.1|DV173197
EST:     GGGTCAGGTTGTTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: GGGTCAGGTTG-TTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|30087517|gb|CB885723.1|CB885723
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|31358946|gb|CD443303.1|CD443303
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGTCGGAGCCGGAGAGGCCACAGCAGCAACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
EST: gi|149110970|gb|EE294469.2|EE294469
EST:     TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAG                         GACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG
genomic: TGGGTCAGGTTGTTCGGATGCTCGAGGCAGAAGACGTGCCTTCACGGGAGgtttgttgta ... tcctctgaagGACCGCCGGAGCCGGAGAGGCCACAGCAGCCACGCAGACAACGAGTCCAAG